miRNA display CGI


Results 41 - 60 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 132012 0.71 0.510396
Target:  5'- gCGCCGcCGGGcUCccgguGCUcucgGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC-GCUC-AG-----UGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133523 0.72 0.409744
Target:  5'- gCGCCGCG-GU-GC-UGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCAgUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 36375 0.76 0.268088
Target:  5'- cCGCCGCGgcccGGgcagCGCgcGCCGCGGCGAc -3'
miRNA:   3'- aGCGGCGC----UCa---GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 8068 0.71 0.510396
Target:  5'- cCGCgCGCaGAGgggggCACc-GCCGCGGCGAg -3'
miRNA:   3'- aGCG-GCG-CUCa----GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 46848 0.76 0.249714
Target:  5'- cUCGCCGCGAGcCGCgucgGCCcaGCAGgCGAa -3'
miRNA:   3'- -AGCGGCGCUCaGUGaa--CGG--CGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 103917 0.7 0.559483
Target:  5'- -gGCCGCGGGcggCGCc-GCCGCGGCc- -3'
miRNA:   3'- agCGGCGCUCa--GUGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 97083 0.75 0.280935
Target:  5'- cCGCCGCGcgcaGCUUaGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCucagUGAA-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 14046 0.7 0.559483
Target:  5'- -gGCCGCGAGcCGCUagguucgcgGCCGguGCu- -3'
miRNA:   3'- agCGGCGCUCaGUGAa--------CGGCguCGcu -5'
6375 3' -58.5 NC_001847.1 + 76985 0.7 0.549544
Target:  5'- cCGCCGCG-GUCGCccGCCucgaggaCAGCGAc -3'
miRNA:   3'- aGCGGCGCuCAGUGaaCGGc------GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 15532 0.7 0.549544
Target:  5'- -aGCCGCGGGcUGCUggcGCCGguGCGc -3'
miRNA:   3'- agCGGCGCUCaGUGAa--CGGCguCGCu -5'
6375 3' -58.5 NC_001847.1 + 96312 0.7 0.53966
Target:  5'- gCGCCGCGGGggaUCGCUcggUGUCgguggGCGGCGGg -3'
miRNA:   3'- aGCGGCGCUC---AGUGA---ACGG-----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133672 0.7 0.529837
Target:  5'- cCGCUGCGGcUC---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUcAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104287 0.71 0.510396
Target:  5'- cCGCCGCG-G-CAga-GCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCaGUgaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 13135 0.71 0.500786
Target:  5'- gCGCCGCGc--CGCcUGCCGCGGCc- -3'
miRNA:   3'- aGCGGCGCucaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 40172 0.71 0.472459
Target:  5'- -aGCCGCGGGg-GC-UGCgCGCGGCGGa -3'
miRNA:   3'- agCGGCGCUCagUGaACG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 2417 0.72 0.444963
Target:  5'- cUCGCUGCGccgcuucggccaAGcuUCGCgccaGCCGCAGCGAg -3'
miRNA:   3'- -AGCGGCGC------------UC--AGUGaa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 83042 0.72 0.435998
Target:  5'- -gGCCGCuAGUgCGCUuggGCCGCGGCGc -3'
miRNA:   3'- agCGGCGcUCA-GUGAa--CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 20851 0.73 0.384497
Target:  5'- gUCGCaaaGCGAGUCugc-GCUGCGGCGGc -3'
miRNA:   3'- -AGCGg--CGCUCAGugaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 83878 0.74 0.360302
Target:  5'- gCGCCGCGGcgcugcaucucGUCACUUucaucgGCCGgCAGCGGc -3'
miRNA:   3'- aGCGGCGCU-----------CAGUGAA------CGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134022 0.75 0.315176
Target:  5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.