Results 61 - 80 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 104287 | 0.71 | 0.510396 |
Target: 5'- cCGCCGCG-G-CAga-GCCGCAGCGGc -3' miRNA: 3'- aGCGGCGCuCaGUgaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 21953 | 0.7 | 0.53966 |
Target: 5'- cUCGUCGUccGGG-CGCUggGCCGCGGCGc -3' miRNA: 3'- -AGCGGCG--CUCaGUGAa-CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 28948 | 0.75 | 0.294265 |
Target: 5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3' miRNA: 3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 62817 | 0.74 | 0.329729 |
Target: 5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3' miRNA: 3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 100525 | 0.73 | 0.375501 |
Target: 5'- -gGCUGCGGGUCGCggagugggUgggcggggagccgGCCGCGGCGAu -3' miRNA: 3'- agCGGCGCUCAGUGa-------A-------------CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 41527 | 0.73 | 0.384497 |
Target: 5'- -gGCCGUGGGUCua-UGCCGCcGCGGg -3' miRNA: 3'- agCGGCGCUCAGugaACGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 107191 | 0.72 | 0.435998 |
Target: 5'- gCGaCCGCGAGcgCGCgcGCCGCGGCc- -3' miRNA: 3'- aGC-GGCGCUCa-GUGaaCGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 101960 | 0.72 | 0.45403 |
Target: 5'- -gGCCGCGAGcUCGCggGCCGUcacGGCa- -3' miRNA: 3'- agCGGCGCUC-AGUGaaCGGCG---UCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 4423 | 0.71 | 0.481814 |
Target: 5'- -gGCgGCGAG-CGCgcGCCGCAGgGAa -3' miRNA: 3'- agCGgCGCUCaGUGaaCGGCGUCgCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 84358 | 0.71 | 0.500786 |
Target: 5'- gCGCCGCGAGgugUAUUgagcgGCCGCGgaccGCGGc -3' miRNA: 3'- aGCGGCGCUCa--GUGAa----CGGCGU----CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 15014 | 0.69 | 0.619936 |
Target: 5'- cCGCgGUGGGgccgCGCgaGCCGCGGCc- -3' miRNA: 3'- aGCGgCGCUCa---GUGaaCGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134235 | 0.69 | 0.609796 |
Target: 5'- gCGCCgGCGGGcgGCggccggcgGCCGCGGCGGc -3' miRNA: 3'- aGCGG-CGCUCagUGaa------CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 4579 | 0.7 | 0.549544 |
Target: 5'- gUGgUGCGGGUCGCggUG-CGCGGCGAc -3' miRNA: 3'- aGCgGCGCUCAGUGa-ACgGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 104043 | 0.7 | 0.549544 |
Target: 5'- gCGCCGCccgcaggccaGGUaCACcgGCCGCAGCGGc -3' miRNA: 3'- aGCGGCGc---------UCA-GUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 14046 | 0.7 | 0.559483 |
Target: 5'- -gGCCGCGAGcCGCUagguucgcgGCCGguGCu- -3' miRNA: 3'- agCGGCGCUCaGUGAa--------CGGCguCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 103917 | 0.7 | 0.559483 |
Target: 5'- -gGCCGCGGGcggCGCc-GCCGCGGCc- -3' miRNA: 3'- agCGGCGCUCa--GUGaaCGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 31906 | 0.7 | 0.569472 |
Target: 5'- cCGCCGC-AGaUCACggccgcgGCCGCGGCu- -3' miRNA: 3'- aGCGGCGcUC-AGUGaa-----CGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 58909 | 0.69 | 0.579504 |
Target: 5'- gCGCCGCGGG-CGggugUUGCgcaGCAGCGAa -3' miRNA: 3'- aGCGGCGCUCaGUg---AACGg--CGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 74017 | 0.69 | 0.589573 |
Target: 5'- aCGCUGCGccGG-CGCgUGCCGCuGGCGGa -3' miRNA: 3'- aGCGGCGC--UCaGUGaACGGCG-UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 77189 | 0.69 | 0.599673 |
Target: 5'- aCGCCGCGAccgCGC-UGCUGCccGCGAc -3' miRNA: 3'- aGCGGCGCUca-GUGaACGGCGu-CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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