miRNA display CGI


Results 81 - 100 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 62564 0.7 0.549544
Target:  5'- cCGCCGCGgccgcGGUUGCUcggcuuugcguuUGCCccGCGGCGAu -3'
miRNA:   3'- aGCGGCGC-----UCAGUGA------------ACGG--CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 29503 0.7 0.559483
Target:  5'- -gGCCGCGGGcggCGCUucgGCCGCAGa-- -3'
miRNA:   3'- agCGGCGCUCa--GUGAa--CGGCGUCgcu -5'
6375 3' -58.5 NC_001847.1 + 89952 0.7 0.559483
Target:  5'- gCGCUGCGAGaCgACUgccaGCgCGCGGCGGa -3'
miRNA:   3'- aGCGGCGCUCaG-UGAa---CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 100572 0.7 0.559483
Target:  5'- aUUGCCGCcAGgCGCUgccgccGCUGCAGCGGc -3'
miRNA:   3'- -AGCGGCGcUCaGUGAa-----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133209 0.7 0.569472
Target:  5'- gCGCCGgcggccCGAGUgGCcgccgcGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC------GCUCAgUGaa----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 74017 0.69 0.589573
Target:  5'- aCGCUGCGccGG-CGCgUGCCGCuGGCGGa -3'
miRNA:   3'- aGCGGCGC--UCaGUGaACGGCG-UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 77189 0.69 0.599673
Target:  5'- aCGCCGCGAccgCGC-UGCUGCccGCGAc -3'
miRNA:   3'- aGCGGCGCUca-GUGaACGGCGu-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 84358 0.71 0.500786
Target:  5'- gCGCCGCGAGgugUAUUgagcgGCCGCGgaccGCGGc -3'
miRNA:   3'- aGCGGCGCUCa--GUGAa----CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 4423 0.71 0.481814
Target:  5'- -gGCgGCGAG-CGCgcGCCGCAGgGAa -3'
miRNA:   3'- agCGgCGCUCaGUGaaCGGCGUCgCU- -5'
6375 3' -58.5 NC_001847.1 + 101960 0.72 0.45403
Target:  5'- -gGCCGCGAGcUCGCggGCCGUcacGGCa- -3'
miRNA:   3'- agCGGCGCUC-AGUGaaCGGCG---UCGcu -5'
6375 3' -58.5 NC_001847.1 + 105614 0.68 0.640235
Target:  5'- -gGCCGCGAG-CGCg-GCCGcCAGCc- -3'
miRNA:   3'- agCGGCGCUCaGUGaaCGGC-GUCGcu -5'
6375 3' -58.5 NC_001847.1 + 44418 0.68 0.650379
Target:  5'- gCGCCGCGAGcggcugcguUCGCgcacgggGgCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUC---------AGUGaa-----CgGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 38323 0.68 0.650379
Target:  5'- aCGcCCGCGcGGUCGCc-GCCGCuGCGc -3'
miRNA:   3'- aGC-GGCGC-UCAGUGaaCGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 34458 0.68 0.660509
Target:  5'- -gGCCGCG-GUgGCc-GCCGgCGGCGAg -3'
miRNA:   3'- agCGGCGCuCAgUGaaCGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 3235 0.68 0.660509
Target:  5'- cCGCCGCG----GCUUGCgguacaGCAGCGAg -3'
miRNA:   3'- aGCGGCGCucagUGAACGg-----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 28948 0.75 0.294265
Target:  5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3'
miRNA:   3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 62817 0.74 0.329729
Target:  5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3'
miRNA:   3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 100525 0.73 0.375501
Target:  5'- -gGCUGCGGGUCGCggagugggUgggcggggagccgGCCGCGGCGAu -3'
miRNA:   3'- agCGGCGCUCAGUGa-------A-------------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 41527 0.73 0.384497
Target:  5'- -gGCCGUGGGUCua-UGCCGCcGCGGg -3'
miRNA:   3'- agCGGCGCUCAGugaACGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 107191 0.72 0.435998
Target:  5'- gCGaCCGCGAGcgCGCgcGCCGCGGCc- -3'
miRNA:   3'- aGC-GGCGCUCa-GUGaaCGGCGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.