Results 101 - 120 of 406 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 20447 | 0.68 | 0.660509 |
Target: 5'- gUCGgCGCGGaaggcGUCcaGCagGCCGCGGCGGc -3' miRNA: 3'- -AGCgGCGCU-----CAG--UGaaCGGCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 45545 | 0.68 | 0.660509 |
Target: 5'- gUGCCGCGcAG-CGCguucaCCGCGGCGGc -3' miRNA: 3'- aGCGGCGC-UCaGUGaac--GGCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 27143 | 0.68 | 0.670616 |
Target: 5'- cUGCCGUccGGGgggCGCa-GCCGCGGCGGc -3' miRNA: 3'- aGCGGCG--CUCa--GUGaaCGGCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 105164 | 0.68 | 0.679686 |
Target: 5'- cCGCCGCGccggcccGGcCGCgucgGCgGCGGCGGc -3' miRNA: 3'- aGCGGCGC-------UCaGUGaa--CGgCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 18948 | 0.68 | 0.680692 |
Target: 5'- cCGCCGCGGcGUCcgggcggcgACgaccagcgcgGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCU-CAG---------UGaa--------CGGCGUCGCu -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 100572 | 0.7 | 0.559483 |
Target: 5'- aUUGCCGCcAGgCGCUgccgccGCUGCAGCGGc -3' miRNA: 3'- -AGCGGCGcUCaGUGAa-----CGGCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 89952 | 0.7 | 0.559483 |
Target: 5'- gCGCUGCGAGaCgACUgccaGCgCGCGGCGGa -3' miRNA: 3'- aGCGGCGCUCaG-UGAa---CG-GCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 28948 | 0.75 | 0.294265 |
Target: 5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3' miRNA: 3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 62817 | 0.74 | 0.329729 |
Target: 5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3' miRNA: 3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 100525 | 0.73 | 0.375501 |
Target: 5'- -gGCUGCGGGUCGCggagugggUgggcggggagccgGCCGCGGCGAu -3' miRNA: 3'- agCGGCGCUCAGUGa-------A-------------CGGCGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 41527 | 0.73 | 0.384497 |
Target: 5'- -gGCCGUGGGUCua-UGCCGCcGCGGg -3' miRNA: 3'- agCGGCGCUCAGugaACGGCGuCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 107191 | 0.72 | 0.435998 |
Target: 5'- gCGaCCGCGAGcgCGCgcGCCGCGGCc- -3' miRNA: 3'- aGC-GGCGCUCa-GUGaaCGGCGUCGcu -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 101960 | 0.72 | 0.45403 |
Target: 5'- -gGCCGCGAGcUCGCggGCCGUcacGGCa- -3' miRNA: 3'- agCGGCGCUC-AGUGaaCGGCG---UCGcu -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 4423 | 0.71 | 0.481814 |
Target: 5'- -gGCgGCGAG-CGCgcGCCGCAGgGAa -3' miRNA: 3'- agCGgCGCUCaGUGaaCGGCGUCgCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 84358 | 0.71 | 0.500786 |
Target: 5'- gCGCCGCGAGgugUAUUgagcgGCCGCGgaccGCGGc -3' miRNA: 3'- aGCGGCGCUCa--GUGAa----CGGCGU----CGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 5195 | 0.7 | 0.520081 |
Target: 5'- gCGCCGCGAG-CGCggcaaGCgCGCcGCGAc -3' miRNA: 3'- aGCGGCGCUCaGUGaa---CG-GCGuCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 3544 | 0.7 | 0.529837 |
Target: 5'- -gGCCGCGAG-CGCg-GCgGCGGCGu -3' miRNA: 3'- agCGGCGCUCaGUGaaCGgCGUCGCu -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 106536 | 0.7 | 0.53966 |
Target: 5'- cCGCCGCGuAG-CGCgcgGCCGCcucGCGGa -3' miRNA: 3'- aGCGGCGC-UCaGUGaa-CGGCGu--CGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 62564 | 0.7 | 0.549544 |
Target: 5'- cCGCCGCGgccgcGGUUGCUcggcuuugcguuUGCCccGCGGCGAu -3' miRNA: 3'- aGCGGCGC-----UCAGUGA------------ACGG--CGUCGCU- -5' |
|||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 29503 | 0.7 | 0.559483 |
Target: 5'- -gGCCGCGGGcggCGCUucgGCCGCAGa-- -3' miRNA: 3'- agCGGCGCUCa--GUGAa--CGGCGUCgcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home