miRNA display CGI


Results 101 - 120 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 44418 0.68 0.650379
Target:  5'- gCGCCGCGAGcggcugcguUCGCgcacgggGgCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUC---------AGUGaa-----CgGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 27987 0.68 0.650379
Target:  5'- gCGCCGCGcuGGgccgCGCUgcaGCgCGCGGCGu -3'
miRNA:   3'- aGCGGCGC--UCa---GUGAa--CG-GCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 41939 0.68 0.640235
Target:  5'- cUCGCCGuCGcAGUCGCgcucgcgGCCGUgcauagugGGCGGc -3'
miRNA:   3'- -AGCGGC-GC-UCAGUGaa-----CGGCG--------UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34097 0.68 0.650379
Target:  5'- cCGCCGUGGcUCGC--GCgGCGGCGGa -3'
miRNA:   3'- aGCGGCGCUcAGUGaaCGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34458 0.68 0.660509
Target:  5'- -gGCCGCG-GUgGCc-GCCGgCGGCGAg -3'
miRNA:   3'- agCGGCGCuCAgUGaaCGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 20447 0.68 0.660509
Target:  5'- gUCGgCGCGGaaggcGUCcaGCagGCCGCGGCGGc -3'
miRNA:   3'- -AGCgGCGCU-----CAG--UGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 78683 0.68 0.650379
Target:  5'- gCGCaCGCGGG-CGCUggUGCCggGCAGCa- -3'
miRNA:   3'- aGCG-GCGCUCaGUGA--ACGG--CGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 81830 0.69 0.630084
Target:  5'- gCGCCGUcuGUCGCccGCCGCAcugGCGGc -3'
miRNA:   3'- aGCGGCGcuCAGUGaaCGGCGU---CGCU- -5'
6375 3' -58.5 NC_001847.1 + 11245 0.69 0.589573
Target:  5'- cCGCCGUuuucGGGaaGCUUGCCGCgGGCGc -3'
miRNA:   3'- aGCGGCG----CUCagUGAACGGCG-UCGCu -5'
6375 3' -58.5 NC_001847.1 + 27143 0.68 0.670616
Target:  5'- cUGCCGUccGGGgggCGCa-GCCGCGGCGGc -3'
miRNA:   3'- aGCGGCG--CUCa--GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 3235 0.68 0.660509
Target:  5'- cCGCCGCG----GCUUGCgguacaGCAGCGAg -3'
miRNA:   3'- aGCGGCGCucagUGAACGg-----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 105164 0.68 0.679686
Target:  5'- cCGCCGCGccggcccGGcCGCgucgGCgGCGGCGGc -3'
miRNA:   3'- aGCGGCGC-------UCaGUGaa--CGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 83490 0.68 0.680692
Target:  5'- cUGuuGCGGG-CGCagcGCCGCGGCGc -3'
miRNA:   3'- aGCggCGCUCaGUGaa-CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 18948 0.68 0.680692
Target:  5'- cCGCCGCGGcGUCcgggcggcgACgaccagcgcgGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCU-CAG---------UGaa--------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 115802 0.68 0.670616
Target:  5'- cCGCUGCGGcuccgcgCGCUgcGCUGCGGCGGg -3'
miRNA:   3'- aGCGGCGCUca-----GUGAa-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 93283 0.68 0.660509
Target:  5'- gCGCCGCGAuGUCggcggcGCgcagGCCGCGcGCGc -3'
miRNA:   3'- aGCGGCGCU-CAG------UGaa--CGGCGU-CGCu -5'
6375 3' -58.5 NC_001847.1 + 84594 0.68 0.680692
Target:  5'- aCGCCGCG-GUCcaGCagcGCCGCuGCGu -3'
miRNA:   3'- aGCGGCGCuCAG--UGaa-CGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 85447 0.68 0.680692
Target:  5'- -gGCCGCGAcGUCAaagGCgGCgacGGCGAg -3'
miRNA:   3'- agCGGCGCU-CAGUgaaCGgCG---UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 53821 0.68 0.660509
Target:  5'- gUGUCGCGGG-CGCggcuggcgGCgGCAGCGGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa------CGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 51392 0.69 0.579504
Target:  5'- -gGCCGCG-GUCGCggcgccgaaccUUGCgGCGGCGc -3'
miRNA:   3'- agCGGCGCuCAGUG-----------AACGgCGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.