Results 41 - 60 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 111276 | 0.66 | 0.796014 |
Target: 5'- gCGCUGCGAaagCACUUuaCGC-GCGAg -3' miRNA: 3'- aGCGGCGCUca-GUGAAcgGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 53460 | 0.66 | 0.796014 |
Target: 5'- gCGCaGCGAG-CACUcGCCcgcgaGCAGCGu -3' miRNA: 3'- aGCGgCGCUCaGUGAaCGG-----CGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 54515 | 0.66 | 0.796014 |
Target: 5'- gCGCCGCc-GUCGCcaucggcaaCCGCGGCGGg -3' miRNA: 3'- aGCGGCGcuCAGUGaac------GGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 69325 | 0.66 | 0.796014 |
Target: 5'- aCGCCGUGGGcCAgcaGCCGCgcagcuAGCGGa -3' miRNA: 3'- aGCGGCGCUCaGUgaaCGGCG------UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 83816 | 0.66 | 0.796014 |
Target: 5'- cCGCCGUugagcaGGUCAUgaagcgccGCCGCAGCa- -3' miRNA: 3'- aGCGGCGc-----UCAGUGaa------CGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 115418 | 0.66 | 0.783349 |
Target: 5'- cCGCCGCGuccggccaaccucGUCGCgggGCCGgAGCc- -3' miRNA: 3'- aGCGGCGCu------------CAGUGaa-CGGCgUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 68504 | 0.66 | 0.781517 |
Target: 5'- gCGCCGCGcgagaacucaaccucGGUgCGCUUGuCCGCAaUGAg -3' miRNA: 3'- aGCGGCGC---------------UCA-GUGAAC-GGCGUcGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 52666 | 0.66 | 0.75915 |
Target: 5'- -gGCCGCGGGcucguccCACggcacGCCGCAcGCGGc -3' miRNA: 3'- agCGGCGCUCa------GUGaa---CGGCGU-CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 59204 | 0.66 | 0.75915 |
Target: 5'- aCGCCGCGuGUgGCggcGCacgGCGGCGc -3' miRNA: 3'- aGCGGCGCuCAgUGaa-CGg--CGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 2892 | 0.66 | 0.768554 |
Target: 5'- gCGCCGCGcGUCGaguaCCGC-GCGAg -3' miRNA: 3'- aGCGGCGCuCAGUgaacGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 28715 | 0.66 | 0.768554 |
Target: 5'- gCGCCGCGAcGcCAUggccugGCUGCAgagcGCGAa -3' miRNA: 3'- aGCGGCGCU-CaGUGaa----CGGCGU----CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 106287 | 0.66 | 0.768554 |
Target: 5'- gCGCCGcCGGcGUCGCgcgcgcgGCCGC-GCGu -3' miRNA: 3'- aGCGGC-GCU-CAGUGaa-----CGGCGuCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 109419 | 0.66 | 0.768554 |
Target: 5'- cCGCCGCuucucGUCcuuCUcggGCCGCAGUGGc -3' miRNA: 3'- aGCGGCGcu---CAGu--GAa--CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 115708 | 0.66 | 0.768554 |
Target: 5'- -gGCUGCGGcccguGUgCGCUUGCCGCcacgGGCGc -3' miRNA: 3'- agCGGCGCU-----CA-GUGAACGGCG----UCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 56513 | 0.66 | 0.776916 |
Target: 5'- gCGCCGCcaaaaagcaccagGAcGUgGaagUGCCGCGGCGGc -3' miRNA: 3'- aGCGGCG-------------CU-CAgUga-ACGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 69217 | 0.66 | 0.777839 |
Target: 5'- gCGuCCGCGGGgaaCGCcgacGCCGCgacGGCGAa -3' miRNA: 3'- aGC-GGCGCUCa--GUGaa--CGGCG---UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 93202 | 0.66 | 0.777839 |
Target: 5'- -gGCCGCGAG-CGCgacUGC-GaCGGCGAg -3' miRNA: 3'- agCGGCGCUCaGUGa--ACGgC-GUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 108140 | 0.66 | 0.777839 |
Target: 5'- gCGCCGcCGAGUacggcaacCGCgccGCCGCAGaCGc -3' miRNA: 3'- aGCGGC-GCUCA--------GUGaa-CGGCGUC-GCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 119731 | 0.66 | 0.777839 |
Target: 5'- cUCGCCGUGccgCGCUccaggGCCGCccaguGGCGGa -3' miRNA: 3'- -AGCGGCGCucaGUGAa----CGGCG-----UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 29093 | 0.66 | 0.777839 |
Target: 5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3' miRNA: 3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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