miRNA display CGI


Results 81 - 100 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 66976 0.67 0.740019
Target:  5'- gUCGCUGC-AGagGCggGCUGCGGCGc -3'
miRNA:   3'- -AGCGGCGcUCagUGaaCGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 109256 0.67 0.739052
Target:  5'- -aGCCaGCGGGUCggcagggGCggGCUGCAaGCGAg -3'
miRNA:   3'- agCGG-CGCUCAG-------UGaaCGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 100907 0.67 0.73031
Target:  5'- gCGCCGCGccgcgUACUggGCCuGCAGCGc -3'
miRNA:   3'- aGCGGCGCuca--GUGAa-CGG-CGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 47857 0.67 0.73031
Target:  5'- -gGCCGCG-GcCGCggGCCGuCGGCGc -3'
miRNA:   3'- agCGGCGCuCaGUGaaCGGC-GUCGCu -5'
6375 3' -58.5 NC_001847.1 + 131446 0.67 0.720518
Target:  5'- aUUGCCGCGccuaccuguGGUgCGCgcagGCuCGCGGCGGc -3'
miRNA:   3'- -AGCGGCGC---------UCA-GUGaa--CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 94621 0.67 0.720518
Target:  5'- aCGUCGCGcGUCGCgcgcaGCCGCcgGGCa- -3'
miRNA:   3'- aGCGGCGCuCAGUGaa---CGGCG--UCGcu -5'
6375 3' -58.5 NC_001847.1 + 114889 0.67 0.720518
Target:  5'- cUCGCCGUc--UCGCUcucgcgGCCGCAGCu- -3'
miRNA:   3'- -AGCGGCGcucAGUGAa-----CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 131608 0.67 0.740019
Target:  5'- cCGCCGCGc-UCGCg-GCCGUAGuCGGc -3'
miRNA:   3'- aGCGGCGCucAGUGaaCGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 91791 0.67 0.748678
Target:  5'- -gGCCGCGGacgcuucgucggcGUCGC--GCCGCgcGGCGAu -3'
miRNA:   3'- agCGGCGCU-------------CAGUGaaCGGCG--UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 4970 0.67 0.749636
Target:  5'- gCGCCGgGGGggcaGCUggggugcggcgGCCGCGGCa- -3'
miRNA:   3'- aGCGGCgCUCag--UGAa----------CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 59204 0.66 0.75915
Target:  5'- aCGCCGCGuGUgGCggcGCacgGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCAgUGaa-CGg--CGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 52666 0.66 0.75915
Target:  5'- -gGCCGCGGGcucguccCACggcacGCCGCAcGCGGc -3'
miRNA:   3'- agCGGCGCUCa------GUGaa---CGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 31315 0.66 0.756307
Target:  5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3'
miRNA:   3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 61754 0.66 0.755357
Target:  5'- gUCGCUGCGAGgccCACggguuaacggugGCgCGguGCGGg -3'
miRNA:   3'- -AGCGGCGCUCa--GUGaa----------CG-GCguCGCU- -5'
6375 3' -58.5 NC_001847.1 + 89316 0.67 0.749636
Target:  5'- cCGCCcaGCGAGUgGCccggGCgGCAGCu- -3'
miRNA:   3'- aGCGG--CGCUCAgUGaa--CGgCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 120339 0.67 0.749636
Target:  5'- gCGCCGCGca--GCUccGCCGCuGCGGu -3'
miRNA:   3'- aGCGGCGCucagUGAa-CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 113960 0.67 0.749636
Target:  5'- aCGCCGcCGGG-CGCgucGCCGCAGa-- -3'
miRNA:   3'- aGCGGC-GCUCaGUGaa-CGGCGUCgcu -5'
6375 3' -58.5 NC_001847.1 + 11509 0.67 0.749636
Target:  5'- cCGCCGCGGGaacuggCACguaGCCGCcgGGUGc -3'
miRNA:   3'- aGCGGCGCUCa-----GUGaa-CGGCG--UCGCu -5'
6375 3' -58.5 NC_001847.1 + 10135 0.67 0.749636
Target:  5'- gUGCUGgGAGgCGC-UGCUGCAGCu- -3'
miRNA:   3'- aGCGGCgCUCaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 59348 0.67 0.720518
Target:  5'- -gGCgGCGAgGUCGCgcGCCGCGcCGAg -3'
miRNA:   3'- agCGgCGCU-CAGUGaaCGGCGUcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.