Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 98739 | 0.66 | 0.952663 |
Target: 5'- gGGUCUgcgcGCGA-GUGCaCCGUCGcCGc- -3' miRNA: 3'- -UCAGAa---CGCUgCACG-GGCAGCaGUuc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 7946 | 0.66 | 0.952663 |
Target: 5'- cAG-CUUGCGGCGUaGCCCGgUG-CAAu -3' miRNA: 3'- -UCaGAACGCUGCA-CGGGCaGCaGUUc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 94406 | 0.67 | 0.92924 |
Target: 5'- cAGUaccGCGACGgggccaUGCCCGUCGUgGu- -3' miRNA: 3'- -UCAgaaCGCUGC------ACGGGCAGCAgUuc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 89132 | 0.67 | 0.923819 |
Target: 5'- uGGUCgUGCGcgcgcuCGUGCCCGUCa----- -3' miRNA: 3'- -UCAGaACGCu-----GCACGGGCAGcaguuc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 30664 | 0.67 | 0.918152 |
Target: 5'- uGGcCgcGCGACG-GCCCGgcCGUCGGGc -3' miRNA: 3'- -UCaGaaCGCUGCaCGGGCa-GCAGUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 133477 | 0.67 | 0.918152 |
Target: 5'- uGGcCgcGCGACG-GCCCGgcCGUCGGGc -3' miRNA: 3'- -UCaGaaCGCUGCaCGGGCa-GCAGUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 94123 | 0.67 | 0.91224 |
Target: 5'- -----cGCGGCGcGCCCGUUG-CAGGa -3' miRNA: 3'- ucagaaCGCUGCaCGGGCAGCaGUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 4586 | 0.67 | 0.906083 |
Target: 5'- gGGUCgcggugcgcgGCGACGaaggcgGCCaCGUCGUCGc- -3' miRNA: 3'- -UCAGaa--------CGCUGCa-----CGG-GCAGCAGUuc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 97807 | 0.68 | 0.899683 |
Target: 5'- cGGUCgcGCG-CGUGgCCG-CGUCGGGc -3' miRNA: 3'- -UCAGaaCGCuGCACgGGCaGCAGUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 5524 | 0.68 | 0.893719 |
Target: 5'- gGGUCUaggGCGGCGacgcucgugacggcgGCCCaGUCGUCGc- -3' miRNA: 3'- -UCAGAa--CGCUGCa--------------CGGG-CAGCAGUuc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 122619 | 0.69 | 0.848424 |
Target: 5'- aGGUC-UGCGGCGUcgucGCCuuCGUCGUCuGGc -3' miRNA: 3'- -UCAGaACGCUGCA----CGG--GCAGCAGuUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 79133 | 0.69 | 0.823298 |
Target: 5'- -----cGCcagGACGUGCCCGUCG-CGGGg -3' miRNA: 3'- ucagaaCG---CUGCACGGGCAGCaGUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 19354 | 0.7 | 0.805637 |
Target: 5'- gGGUCUUGCG-CGcGCCCGaCGguggcCAGGg -3' miRNA: 3'- -UCAGAACGCuGCaCGGGCaGCa----GUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 84435 | 0.74 | 0.564491 |
Target: 5'- cGUCgugugUGCGcacGCGUGCCgGUCGUCGc- -3' miRNA: 3'- uCAGa----ACGC---UGCACGGgCAGCAGUuc -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 67638 | 0.75 | 0.514071 |
Target: 5'- cGUCc-GCGAcCGUGCCC-UCGUCGAGg -3' miRNA: 3'- uCAGaaCGCU-GCACGGGcAGCAGUUC- -5' |
|||||||
6375 | 5' | -54.1 | NC_001847.1 | + | 108885 | 1.09 | 0.003861 |
Target: 5'- cAGUCUUGCGACGUGCCCGUCGUCAAGa -3' miRNA: 3'- -UCAGAACGCUGCACGGGCAGCAGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home