miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 5' -54.1 NC_001847.1 + 98739 0.66 0.952663
Target:  5'- gGGUCUgcgcGCGA-GUGCaCCGUCGcCGc- -3'
miRNA:   3'- -UCAGAa---CGCUgCACG-GGCAGCaGUuc -5'
6375 5' -54.1 NC_001847.1 + 7946 0.66 0.952663
Target:  5'- cAG-CUUGCGGCGUaGCCCGgUG-CAAu -3'
miRNA:   3'- -UCaGAACGCUGCA-CGGGCaGCaGUUc -5'
6375 5' -54.1 NC_001847.1 + 94406 0.67 0.92924
Target:  5'- cAGUaccGCGACGgggccaUGCCCGUCGUgGu- -3'
miRNA:   3'- -UCAgaaCGCUGC------ACGGGCAGCAgUuc -5'
6375 5' -54.1 NC_001847.1 + 89132 0.67 0.923819
Target:  5'- uGGUCgUGCGcgcgcuCGUGCCCGUCa----- -3'
miRNA:   3'- -UCAGaACGCu-----GCACGGGCAGcaguuc -5'
6375 5' -54.1 NC_001847.1 + 133477 0.67 0.918152
Target:  5'- uGGcCgcGCGACG-GCCCGgcCGUCGGGc -3'
miRNA:   3'- -UCaGaaCGCUGCaCGGGCa-GCAGUUC- -5'
6375 5' -54.1 NC_001847.1 + 30664 0.67 0.918152
Target:  5'- uGGcCgcGCGACG-GCCCGgcCGUCGGGc -3'
miRNA:   3'- -UCaGaaCGCUGCaCGGGCa-GCAGUUC- -5'
6375 5' -54.1 NC_001847.1 + 94123 0.67 0.91224
Target:  5'- -----cGCGGCGcGCCCGUUG-CAGGa -3'
miRNA:   3'- ucagaaCGCUGCaCGGGCAGCaGUUC- -5'
6375 5' -54.1 NC_001847.1 + 4586 0.67 0.906083
Target:  5'- gGGUCgcggugcgcgGCGACGaaggcgGCCaCGUCGUCGc- -3'
miRNA:   3'- -UCAGaa--------CGCUGCa-----CGG-GCAGCAGUuc -5'
6375 5' -54.1 NC_001847.1 + 97807 0.68 0.899683
Target:  5'- cGGUCgcGCG-CGUGgCCG-CGUCGGGc -3'
miRNA:   3'- -UCAGaaCGCuGCACgGGCaGCAGUUC- -5'
6375 5' -54.1 NC_001847.1 + 5524 0.68 0.893719
Target:  5'- gGGUCUaggGCGGCGacgcucgugacggcgGCCCaGUCGUCGc- -3'
miRNA:   3'- -UCAGAa--CGCUGCa--------------CGGG-CAGCAGUuc -5'
6375 5' -54.1 NC_001847.1 + 122619 0.69 0.848424
Target:  5'- aGGUC-UGCGGCGUcgucGCCuuCGUCGUCuGGc -3'
miRNA:   3'- -UCAGaACGCUGCA----CGG--GCAGCAGuUC- -5'
6375 5' -54.1 NC_001847.1 + 79133 0.69 0.823298
Target:  5'- -----cGCcagGACGUGCCCGUCG-CGGGg -3'
miRNA:   3'- ucagaaCG---CUGCACGGGCAGCaGUUC- -5'
6375 5' -54.1 NC_001847.1 + 19354 0.7 0.805637
Target:  5'- gGGUCUUGCG-CGcGCCCGaCGguggcCAGGg -3'
miRNA:   3'- -UCAGAACGCuGCaCGGGCaGCa----GUUC- -5'
6375 5' -54.1 NC_001847.1 + 84435 0.74 0.564491
Target:  5'- cGUCgugugUGCGcacGCGUGCCgGUCGUCGc- -3'
miRNA:   3'- uCAGa----ACGC---UGCACGGgCAGCAGUuc -5'
6375 5' -54.1 NC_001847.1 + 67638 0.75 0.514071
Target:  5'- cGUCc-GCGAcCGUGCCC-UCGUCGAGg -3'
miRNA:   3'- uCAGaaCGCU-GCACGGGcAGCAGUUC- -5'
6375 5' -54.1 NC_001847.1 + 108885 1.09 0.003861
Target:  5'- cAGUCUUGCGACGUGCCCGUCGUCAAGa -3'
miRNA:   3'- -UCAGAACGCUGCACGGGCAGCAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.