Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 130235 | 0.67 | 0.91732 |
Target: 5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3' miRNA: 3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 74482 | 0.67 | 0.911341 |
Target: 5'- -gCUGGg---CGUGUugAUGCAGCaGCc -3' miRNA: 3'- ugGACCagaaGCACAugUGCGUCG-CG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 27422 | 0.67 | 0.91732 |
Target: 5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3' miRNA: 3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 3973 | 0.67 | 0.92305 |
Target: 5'- cGCgaGGUgggcCGUGaGCACGCcAGCGCg -3' miRNA: 3'- -UGgaCCAgaa-GCACaUGUGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 117704 | 0.67 | 0.92305 |
Target: 5'- cACCgaGGg---CGUGUACACuuGGCGCc -3' miRNA: 3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 82330 | 0.67 | 0.928531 |
Target: 5'- cGCCcgaGGUCca-GUGU--GCGCGGCGCc -3' miRNA: 3'- -UGGa--CCAGaagCACAugUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 81505 | 0.67 | 0.928531 |
Target: 5'- uGCCcGGUCUUUGUcgcggACGCGagucuGCGCa -3' miRNA: 3'- -UGGaCCAGAAGCAca---UGUGCgu---CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 13739 | 0.67 | 0.91732 |
Target: 5'- uCCUGGg---CGUGgggcugauCGCGCAGCGg -3' miRNA: 3'- uGGACCagaaGCACau------GUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 92717 | 0.67 | 0.911341 |
Target: 5'- -gCUGGcagagCcUCGcGUGCucGCGCAGCGCg -3' miRNA: 3'- ugGACCa----GaAGCaCAUG--UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 19616 | 0.67 | 0.92305 |
Target: 5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3' miRNA: 3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 131504 | 0.67 | 0.911341 |
Target: 5'- gGCgCUGGUggacCUg-GUGUACGCGCGcCGCg -3' miRNA: 3'- -UG-GACCA----GAagCACAUGUGCGUcGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 78541 | 0.67 | 0.92305 |
Target: 5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3' miRNA: 3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 78858 | 0.67 | 0.905116 |
Target: 5'- -gCUGGUgUgcUCGcgGUGCGCGCccucGCGCa -3' miRNA: 3'- ugGACCAgA--AGCa-CAUGUGCGu---CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 99030 | 0.68 | 0.884988 |
Target: 5'- ---cGG-CUUCGUGgaagGCGCcCAGCGCg -3' miRNA: 3'- uggaCCaGAAGCACa---UGUGcGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 2237 | 0.68 | 0.887796 |
Target: 5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3' miRNA: 3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 14624 | 0.68 | 0.884988 |
Target: 5'- cACgUGGUUUUCG---AC-CGCGGCGCu -3' miRNA: 3'- -UGgACCAGAAGCacaUGuGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 107109 | 0.68 | 0.877076 |
Target: 5'- cGCC-GcGUCUggCGUGUGCAgGCgcucguaAGCGCg -3' miRNA: 3'- -UGGaC-CAGAa-GCACAUGUgCG-------UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 35918 | 0.68 | 0.862764 |
Target: 5'- cGCgUGGgagcCUUUGUGgcgGCGCGCcgccGCGCg -3' miRNA: 3'- -UGgACCa---GAAGCACa--UGUGCGu---CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 70288 | 0.68 | 0.862764 |
Target: 5'- cGCCUGG-CggggUCGcg-GCGCGCcGCGCu -3' miRNA: 3'- -UGGACCaGa---AGCacaUGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 33343 | 0.68 | 0.877806 |
Target: 5'- gGCCUGGguggCGcUGcUGCACGaGGCGCa -3' miRNA: 3'- -UGGACCagaaGC-AC-AUGUGCgUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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