Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 102688 | 0.7 | 0.775739 |
Target: 5'- cGCgCUGG-CgggCGUGUGCuGCgGCAGCGCc -3' miRNA: 3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 72115 | 0.7 | 0.775739 |
Target: 5'- cGCCgUGGUCc-CGgccuucGCGCGCGGCGCg -3' miRNA: 3'- -UGG-ACCAGaaGCaca---UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 89210 | 0.7 | 0.794505 |
Target: 5'- uGCUUGuGUUUgcgcaGUG-GCACGCGGCGCu -3' miRNA: 3'- -UGGAC-CAGAag---CACaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 10951 | 0.7 | 0.794505 |
Target: 5'- -gCUGGcCUUUGcgcauaUGUACgugGCGCGGCGCg -3' miRNA: 3'- ugGACCaGAAGC------ACAUG---UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66754 | 0.7 | 0.812661 |
Target: 5'- uCCUGGcCUUCGccggGCACGaAGCGCc -3' miRNA: 3'- uGGACCaGAAGCaca-UGUGCgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 33777 | 0.7 | 0.766151 |
Target: 5'- uGCCgcugcagGG-CUUCGcgggGcUGCGCGCGGCGCc -3' miRNA: 3'- -UGGa------CCaGAAGCa---C-AUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 1069 | 0.69 | 0.830133 |
Target: 5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3' miRNA: 3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 103882 | 0.69 | 0.830133 |
Target: 5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3' miRNA: 3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 30187 | 0.69 | 0.838591 |
Target: 5'- gACCUGGcCgacgCG-GUGCGCGgCGcGCGCg -3' miRNA: 3'- -UGGACCaGaa--GCaCAUGUGC-GU-CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 5859 | 0.69 | 0.838591 |
Target: 5'- cGCCUGGcCcUCGagGUgguccagcgcuGCGCGCAGgGCg -3' miRNA: 3'- -UGGACCaGaAGCa-CA-----------UGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 55692 | 0.69 | 0.846037 |
Target: 5'- gGCCgGGgaaaacucgcgcuUCUUCGUGUGCcCGCcgcccucgGGCGCc -3' miRNA: 3'- -UGGaCC-------------AGAAGCACAUGuGCG--------UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 37036 | 0.69 | 0.821486 |
Target: 5'- gACCUGG---UCGUGgcCGCGCucaugGGCGCc -3' miRNA: 3'- -UGGACCagaAGCACauGUGCG-----UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 30237 | 0.69 | 0.854914 |
Target: 5'- gGCCgaGGUgcgCGUGUcGCugGCGGCGUu -3' miRNA: 3'- -UGGa-CCAgaaGCACA-UGugCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 83349 | 0.69 | 0.854914 |
Target: 5'- -gCUGGUCUgcgacCGgg-ACGCGCGGgGCg -3' miRNA: 3'- ugGACCAGAa----GCacaUGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 36507 | 0.69 | 0.821486 |
Target: 5'- uUCUGGgcgacgaagCggCgGUGUGCACGCuGCGCg -3' miRNA: 3'- uGGACCa--------GaaG-CACAUGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 16616 | 0.69 | 0.821486 |
Target: 5'- uGCgUGGUCUUUGgggGgGgGCGCGGCGg -3' miRNA: 3'- -UGgACCAGAAGCa--CaUgUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 35950 | 0.69 | 0.821486 |
Target: 5'- cGCCUGGg---CGc-UGCugGCGGCGCu -3' miRNA: 3'- -UGGACCagaaGCacAUGugCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 86526 | 0.69 | 0.838591 |
Target: 5'- -gCUGGgCgccCGcGUGCugGCGGCGCg -3' miRNA: 3'- ugGACCaGaa-GCaCAUGugCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 14624 | 0.68 | 0.884988 |
Target: 5'- cACgUGGUUUUCG---AC-CGCGGCGCu -3' miRNA: 3'- -UGgACCAGAAGCacaUGuGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 107109 | 0.68 | 0.877076 |
Target: 5'- cGCC-GcGUCUggCGUGUGCAgGCgcucguaAGCGCg -3' miRNA: 3'- -UGGaC-CAGAa-GCACAUGUgCG-------UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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