miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 70288 0.68 0.862764
Target:  5'- cGCCUGG-CggggUCGcg-GCGCGCcGCGCu -3'
miRNA:   3'- -UGGACCaGa---AGCacaUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 117393 0.68 0.870397
Target:  5'- gACCUcgcGGgUUUCG-GUGCGCGCGGUGg -3'
miRNA:   3'- -UGGA---CCaGAAGCaCAUGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 33343 0.68 0.877806
Target:  5'- gGCCUGGguggCGcUGcUGCACGaGGCGCa -3'
miRNA:   3'- -UGGACCagaaGC-AC-AUGUGCgUCGCG- -5'
6376 3' -54 NC_001847.1 + 35918 0.68 0.862764
Target:  5'- cGCgUGGgagcCUUUGUGgcgGCGCGCcgccGCGCg -3'
miRNA:   3'- -UGgACCa---GAAGCACa--UGUGCGu---CGCG- -5'
6376 3' -54 NC_001847.1 + 60630 0.68 0.862764
Target:  5'- cGCC-GcGUC-UCGUccaGCGCGCGGCGCa -3'
miRNA:   3'- -UGGaC-CAGaAGCAca-UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 87867 0.68 0.891936
Target:  5'- gGCCUguGGUCgcUGUGgcCGCGCGGCu- -3'
miRNA:   3'- -UGGA--CCAGaaGCACauGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 2237 0.68 0.887796
Target:  5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3'
miRNA:   3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 14624 0.68 0.884988
Target:  5'- cACgUGGUUUUCG---AC-CGCGGCGCu -3'
miRNA:   3'- -UGgACCAGAAGCacaUGuGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 107109 0.68 0.877076
Target:  5'- cGCC-GcGUCUggCGUGUGCAgGCgcucguaAGCGCg -3'
miRNA:   3'- -UGGaC-CAGAa-GCACAUGUgCG-------UCGCG- -5'
6376 3' -54 NC_001847.1 + 105050 0.68 0.887796
Target:  5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3'
miRNA:   3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 20759 0.68 0.862764
Target:  5'- gGCCUcGcCUUCGUcgGCGCGCAGaUGCg -3'
miRNA:   3'- -UGGAcCaGAAGCAcaUGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 63304 0.67 0.898647
Target:  5'- cACCgGGUCcagcagcgCGUGguucaGCGCGGCGUg -3'
miRNA:   3'- -UGGaCCAGaa------GCACaug--UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 74124 0.67 0.898647
Target:  5'- cGCCcGGgga-UGUG-ACGCGCGGCGCc -3'
miRNA:   3'- -UGGaCCagaaGCACaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 85211 0.67 0.898647
Target:  5'- cGCCacgGcGUCcaaCGUGcgcACGCGCAGCGCc -3'
miRNA:   3'- -UGGa--C-CAGaa-GCACa--UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 46203 0.67 0.905116
Target:  5'- ---aGGUCggCGUGUccguCGCGCAugGCGCa -3'
miRNA:   3'- uggaCCAGaaGCACAu---GUGCGU--CGCG- -5'
6376 3' -54 NC_001847.1 + 42061 0.67 0.928531
Target:  5'- uGCCUGGggCUg---GUGcCGCuGCGGCGCa -3'
miRNA:   3'- -UGGACCa-GAagcaCAU-GUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 78541 0.67 0.92305
Target:  5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3'
miRNA:   3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 19616 0.67 0.92305
Target:  5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3'
miRNA:   3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 117704 0.67 0.92305
Target:  5'- cACCgaGGg---CGUGUACACuuGGCGCc -3'
miRNA:   3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5'
6376 3' -54 NC_001847.1 + 27422 0.67 0.91732
Target:  5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3'
miRNA:   3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.