Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 96803 | 0.66 | 0.95222 |
Target: 5'- -gCUGGg--UCGggggGCGCGCAGCGg -3' miRNA: 3'- ugGACCagaAGCaca-UGUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 97801 | 0.66 | 0.95222 |
Target: 5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3' miRNA: 3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 16289 | 0.66 | 0.95222 |
Target: 5'- cGCCggcgGGUCgaCGUaUACcgucaccCGCGGCGCg -3' miRNA: 3'- -UGGa---CCAGaaGCAcAUGu------GCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 54036 | 0.66 | 0.95222 |
Target: 5'- uUCUGGaugUCcUCGUcgGCGCGCGGCGa -3' miRNA: 3'- uGGACC---AGaAGCAcaUGUGCGUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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