miRNA display CGI


Results 61 - 80 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 117393 0.68 0.870397
Target:  5'- gACCUcgcGGgUUUCG-GUGCGCGCGGUGg -3'
miRNA:   3'- -UGGA---CCaGAAGCaCAUGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 49221 0.68 0.869643
Target:  5'- gGCCcgcgGG-CUUCGUGUACgucugcgACGCGGCu- -3'
miRNA:   3'- -UGGa---CCaGAAGCACAUG-------UGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 20759 0.68 0.862764
Target:  5'- gGCCUcGcCUUCGUcgGCGCGCAGaUGCg -3'
miRNA:   3'- -UGGAcCaGAAGCAcaUGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 35918 0.68 0.862764
Target:  5'- cGCgUGGgagcCUUUGUGgcgGCGCGCcgccGCGCg -3'
miRNA:   3'- -UGgACCa---GAAGCACa--UGUGCGu---CGCG- -5'
6376 3' -54 NC_001847.1 + 70288 0.68 0.862764
Target:  5'- cGCCUGG-CggggUCGcg-GCGCGCcGCGCu -3'
miRNA:   3'- -UGGACCaGa---AGCacaUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 60630 0.68 0.862764
Target:  5'- cGCC-GcGUC-UCGUccaGCGCGCGGCGCa -3'
miRNA:   3'- -UGGaC-CAGaAGCAca-UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 30237 0.69 0.854914
Target:  5'- gGCCgaGGUgcgCGUGUcGCugGCGGCGUu -3'
miRNA:   3'- -UGGa-CCAgaaGCACA-UGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 83349 0.69 0.854914
Target:  5'- -gCUGGUCUgcgacCGgg-ACGCGCGGgGCg -3'
miRNA:   3'- ugGACCAGAa----GCacaUGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 55692 0.69 0.846037
Target:  5'- gGCCgGGgaaaacucgcgcuUCUUCGUGUGCcCGCcgcccucgGGCGCc -3'
miRNA:   3'- -UGGaCC-------------AGAAGCACAUGuGCG--------UCGCG- -5'
6376 3' -54 NC_001847.1 + 86526 0.69 0.838591
Target:  5'- -gCUGGgCgccCGcGUGCugGCGGCGCg -3'
miRNA:   3'- ugGACCaGaa-GCaCAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 30187 0.69 0.838591
Target:  5'- gACCUGGcCgacgCG-GUGCGCGgCGcGCGCg -3'
miRNA:   3'- -UGGACCaGaa--GCaCAUGUGC-GU-CGCG- -5'
6376 3' -54 NC_001847.1 + 5859 0.69 0.838591
Target:  5'- cGCCUGGcCcUCGagGUgguccagcgcuGCGCGCAGgGCg -3'
miRNA:   3'- -UGGACCaGaAGCa-CA-----------UGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 103882 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 1069 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 35950 0.69 0.821486
Target:  5'- cGCCUGGg---CGc-UGCugGCGGCGCu -3'
miRNA:   3'- -UGGACCagaaGCacAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 36507 0.69 0.821486
Target:  5'- uUCUGGgcgacgaagCggCgGUGUGCACGCuGCGCg -3'
miRNA:   3'- uGGACCa--------GaaG-CACAUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 37036 0.69 0.821486
Target:  5'- gACCUGG---UCGUGgcCGCGCucaugGGCGCc -3'
miRNA:   3'- -UGGACCagaAGCACauGUGCG-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 16616 0.69 0.821486
Target:  5'- uGCgUGGUCUUUGgggGgGgGCGCGGCGg -3'
miRNA:   3'- -UGgACCAGAAGCa--CaUgUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 66754 0.7 0.812661
Target:  5'- uCCUGGcCUUCGccggGCACGaAGCGCc -3'
miRNA:   3'- uGGACCaGAAGCaca-UGUGCgUCGCG- -5'
6376 3' -54 NC_001847.1 + 10951 0.7 0.794505
Target:  5'- -gCUGGcCUUUGcgcauaUGUACgugGCGCGGCGCg -3'
miRNA:   3'- ugGACCaGAAGC------ACAUG---UGCGUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.