Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 89210 | 0.7 | 0.794505 |
Target: 5'- uGCUUGuGUUUgcgcaGUG-GCACGCGGCGCu -3' miRNA: 3'- -UGGAC-CAGAag---CACaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 72115 | 0.7 | 0.775739 |
Target: 5'- cGCCgUGGUCc-CGgccuucGCGCGCGGCGCg -3' miRNA: 3'- -UGG-ACCAGaaGCaca---UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 102688 | 0.7 | 0.775739 |
Target: 5'- cGCgCUGG-CgggCGUGUGCuGCgGCAGCGCc -3' miRNA: 3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 37053 | 0.7 | 0.766151 |
Target: 5'- aGCCUGGgCUgggggCGgcugGUGCACGCGGUa- -3' miRNA: 3'- -UGGACCaGAa----GCa---CAUGUGCGUCGcg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 33777 | 0.7 | 0.766151 |
Target: 5'- uGCCgcugcagGG-CUUCGcgggGcUGCGCGCGGCGCc -3' miRNA: 3'- -UGGa------CCaGAAGCa---C-AUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 133456 | 0.71 | 0.756438 |
Target: 5'- cCCUGGUUccCGUGUACAUGCA-CGg -3' miRNA: 3'- uGGACCAGaaGCACAUGUGCGUcGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66748 | 0.71 | 0.74661 |
Target: 5'- uACCUGGccgagugCUUCGUGU-CGCuCGGCGUc -3' miRNA: 3'- -UGGACCa------GAAGCACAuGUGcGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 67731 | 0.71 | 0.74661 |
Target: 5'- aGCCUGGcCUcUCG-GcACACGCgccGGCGCa -3' miRNA: 3'- -UGGACCaGA-AGCaCaUGUGCG---UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 76799 | 0.71 | 0.740663 |
Target: 5'- cGCCUGGcCgcccucugcuggcagUUUGUGcacUAUACGCGGCGCc -3' miRNA: 3'- -UGGACCaG---------------AAGCAC---AUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 72858 | 0.71 | 0.726652 |
Target: 5'- uGCCUGGg---CGUGgacaucCACGCAGuCGCg -3' miRNA: 3'- -UGGACCagaaGCACau----GUGCGUC-GCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 99683 | 0.72 | 0.675438 |
Target: 5'- -gCUGG-CUUUGcg-GCGCGCGGCGCg -3' miRNA: 3'- ugGACCaGAAGCacaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 52285 | 0.72 | 0.665047 |
Target: 5'- cGCC-GG-CUUUGUGUGCGCGaccgcgGGCGCg -3' miRNA: 3'- -UGGaCCaGAAGCACAUGUGCg-----UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 105329 | 0.73 | 0.633742 |
Target: 5'- gACCUGcGUCgUCGUGgGCGCcGgGGCGCu -3' miRNA: 3'- -UGGAC-CAGaAGCACaUGUG-CgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 31932 | 0.73 | 0.612851 |
Target: 5'- gGCCccGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3' miRNA: 3'- -UGGa-CCAGA---AGCa------CA---UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 31062 | 0.73 | 0.602424 |
Target: 5'- cGCCgcugugGGUUUUCGcaaccaGUACgACGCGGCGCu -3' miRNA: 3'- -UGGa-----CCAGAAGCa-----CAUG-UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 134746 | 0.73 | 0.602424 |
Target: 5'- cCCUcGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3' miRNA: 3'- uGGA-CCAGA---AGCa------CA---UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 131101 | 0.74 | 0.56102 |
Target: 5'- cACCgUGGaUCUcUCGgg-GCGCGCGGCGCg -3' miRNA: 3'- -UGG-ACC-AGA-AGCacaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 33319 | 0.74 | 0.56102 |
Target: 5'- aGCCUGuUgUUCGUGgcgGCGCGCuGCGUg -3' miRNA: 3'- -UGGACcAgAAGCACa--UGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 26772 | 0.74 | 0.55078 |
Target: 5'- gGCCUGGUCa--GUGcGCGCGCccuccuGCGCg -3' miRNA: 3'- -UGGACCAGaagCACaUGUGCGu-----CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 122630 | 0.75 | 0.510461 |
Target: 5'- gACCUGGUCUUUGacgACGCGcCGGCuGCg -3' miRNA: 3'- -UGGACCAGAAGCacaUGUGC-GUCG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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