miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 47857 0.66 0.933763
Target:  5'- ---aGGUCg-CGUGcugcgcgggcGCGCGCAGCGCg -3'
miRNA:   3'- uggaCCAGaaGCACa---------UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 49221 0.68 0.869643
Target:  5'- gGCCcgcgGG-CUUCGUGUACgucugcgACGCGGCu- -3'
miRNA:   3'- -UGGa---CCaGAAGCACAUG-------UGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 50059 0.66 0.947973
Target:  5'- gGCCgcgGGUCc------GCGCGCGGCGCg -3'
miRNA:   3'- -UGGa--CCAGaagcacaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 52285 0.72 0.665047
Target:  5'- cGCC-GG-CUUUGUGUGCGCGaccgcgGGCGCg -3'
miRNA:   3'- -UGGaCCaGAAGCACAUGUGCg-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 54036 0.66 0.95222
Target:  5'- uUCUGGaugUCcUCGUcgGCGCGCGGCGa -3'
miRNA:   3'- uGGACC---AGaAGCAcaUGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 54372 0.66 0.938746
Target:  5'- gGCCgGGUCguccCG-GUcCGCGCcGGCGCg -3'
miRNA:   3'- -UGGaCCAGaa--GCaCAuGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 55377 0.66 0.933763
Target:  5'- gACCUGGUUUcUG-GUGCcgcugaucGCGCuGGCGCu -3'
miRNA:   3'- -UGGACCAGAaGCaCAUG--------UGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 55692 0.69 0.846037
Target:  5'- gGCCgGGgaaaacucgcgcuUCUUCGUGUGCcCGCcgcccucgGGCGCc -3'
miRNA:   3'- -UGGaCC-------------AGAAGCACAUGuGCG--------UCGCG- -5'
6376 3' -54 NC_001847.1 + 60033 0.67 0.92305
Target:  5'- uGCCgucGGccUCUUCGUcggGCGCgagGCGGCGCg -3'
miRNA:   3'- -UGGa--CC--AGAAGCAca-UGUG---CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 60630 0.68 0.862764
Target:  5'- cGCC-GcGUC-UCGUccaGCGCGCGGCGCa -3'
miRNA:   3'- -UGGaC-CAGaAGCAca-UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 60913 0.66 0.95222
Target:  5'- cACCUcGGggcaggCUUCGU--ACACGCgagccacauAGCGCg -3'
miRNA:   3'- -UGGA-CCa-----GAAGCAcaUGUGCG---------UCGCG- -5'
6376 3' -54 NC_001847.1 + 63304 0.67 0.898647
Target:  5'- cACCgGGUCcagcagcgCGUGguucaGCGCGGCGUg -3'
miRNA:   3'- -UGGaCCAGaa------GCACaug--UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 64088 0.66 0.938746
Target:  5'- cCCUcgaGGUgUUCGUGcuggACGugucCGCGGCGCc -3'
miRNA:   3'- uGGA---CCAgAAGCACa---UGU----GCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 66748 0.71 0.74661
Target:  5'- uACCUGGccgagugCUUCGUGU-CGCuCGGCGUc -3'
miRNA:   3'- -UGGACCa------GAAGCACAuGUGcGUCGCG- -5'
6376 3' -54 NC_001847.1 + 66754 0.7 0.812661
Target:  5'- uCCUGGcCUUCGccggGCACGaAGCGCc -3'
miRNA:   3'- uGGACCaGAAGCaca-UGUGCgUCGCG- -5'
6376 3' -54 NC_001847.1 + 66801 0.66 0.943482
Target:  5'- gUCUGGgcgUCG-GUAgGCGgGGCGCu -3'
miRNA:   3'- uGGACCagaAGCaCAUgUGCgUCGCG- -5'
6376 3' -54 NC_001847.1 + 66864 0.76 0.471426
Target:  5'- cGCCUcucGGgCUUCGUGUACGCGCccaaccgggAGUGCu -3'
miRNA:   3'- -UGGA---CCaGAAGCACAUGUGCG---------UCGCG- -5'
6376 3' -54 NC_001847.1 + 67731 0.71 0.74661
Target:  5'- aGCCUGGcCUcUCG-GcACACGCgccGGCGCa -3'
miRNA:   3'- -UGGACCaGA-AGCaCaUGUGCG---UCGCG- -5'
6376 3' -54 NC_001847.1 + 70288 0.68 0.862764
Target:  5'- cGCCUGG-CggggUCGcg-GCGCGCcGCGCu -3'
miRNA:   3'- -UGGACCaGa---AGCacaUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 71056 0.66 0.943482
Target:  5'- uUCUGGaCguggaccCG-GUGCugGCGGCGCu -3'
miRNA:   3'- uGGACCaGaa-----GCaCAUGugCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.