miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 72115 0.7 0.775739
Target:  5'- cGCCgUGGUCc-CGgccuucGCGCGCGGCGCg -3'
miRNA:   3'- -UGG-ACCAGaaGCaca---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 72858 0.71 0.726652
Target:  5'- uGCCUGGg---CGUGgacaucCACGCAGuCGCg -3'
miRNA:   3'- -UGGACCagaaGCACau----GUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 74124 0.67 0.898647
Target:  5'- cGCCcGGgga-UGUG-ACGCGCGGCGCc -3'
miRNA:   3'- -UGGaCCagaaGCACaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 74482 0.67 0.911341
Target:  5'- -gCUGGg---CGUGUugAUGCAGCaGCc -3'
miRNA:   3'- ugGACCagaaGCACAugUGCGUCG-CG- -5'
6376 3' -54 NC_001847.1 + 76504 0.66 0.947973
Target:  5'- gACCcGGcggaaaUCUUCGUGgcccagaugAUGCgGCAGCGCu -3'
miRNA:   3'- -UGGaCC------AGAAGCACa--------UGUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 76799 0.71 0.740663
Target:  5'- cGCCUGGcCgcccucugcuggcagUUUGUGcacUAUACGCGGCGCc -3'
miRNA:   3'- -UGGACCaG---------------AAGCAC---AUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 78541 0.67 0.92305
Target:  5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3'
miRNA:   3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 78665 0.77 0.415889
Target:  5'- cGCCUGcGUCgccggCGUGcGCACGCgGGCGCu -3'
miRNA:   3'- -UGGAC-CAGaa---GCACaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 78858 0.67 0.905116
Target:  5'- -gCUGGUgUgcUCGcgGUGCGCGCccucGCGCa -3'
miRNA:   3'- ugGACCAgA--AGCa-CAUGUGCGu---CGCG- -5'
6376 3' -54 NC_001847.1 + 81505 0.67 0.928531
Target:  5'- uGCCcGGUCUUUGUcgcggACGCGagucuGCGCa -3'
miRNA:   3'- -UGGaCCAGAAGCAca---UGUGCgu---CGCG- -5'
6376 3' -54 NC_001847.1 + 82330 0.67 0.928531
Target:  5'- cGCCcgaGGUCca-GUGU--GCGCGGCGCc -3'
miRNA:   3'- -UGGa--CCAGaagCACAugUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 83349 0.69 0.854914
Target:  5'- -gCUGGUCUgcgacCGgg-ACGCGCGGgGCg -3'
miRNA:   3'- ugGACCAGAa----GCacaUGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 85211 0.67 0.898647
Target:  5'- cGCCacgGcGUCcaaCGUGcgcACGCGCAGCGCc -3'
miRNA:   3'- -UGGa--C-CAGaa-GCACa--UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 86526 0.69 0.838591
Target:  5'- -gCUGGgCgccCGcGUGCugGCGGCGCg -3'
miRNA:   3'- ugGACCaGaa-GCaCAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 87867 0.68 0.891936
Target:  5'- gGCCUguGGUCgcUGUGgcCGCGCGGCu- -3'
miRNA:   3'- -UGGA--CCAGaaGCACauGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 88533 0.67 0.92305
Target:  5'- cCCUcGUaaacgUGUGUGCGCGUGGCGUg -3'
miRNA:   3'- uGGAcCAgaa--GCACAUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 89210 0.7 0.794505
Target:  5'- uGCUUGuGUUUgcgcaGUG-GCACGCGGCGCu -3'
miRNA:   3'- -UGGAC-CAGAag---CACaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 92717 0.67 0.911341
Target:  5'- -gCUGGcagagCcUCGcGUGCucGCGCAGCGCg -3'
miRNA:   3'- ugGACCa----GaAGCaCAUG--UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 93341 0.66 0.938746
Target:  5'- cGCCacGUCcUCGUa-GCGCGCGGCGUu -3'
miRNA:   3'- -UGGacCAGaAGCAcaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 93664 0.66 0.943482
Target:  5'- aGCUg---CUUCGUGcGCAUGCcGCGCg -3'
miRNA:   3'- -UGGaccaGAAGCACaUGUGCGuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.