miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 96012 0.66 0.95222
Target:  5'- aACCUGcGgCUcaacgcCGUGUACguagcccugucGCGCAGCGUg -3'
miRNA:   3'- -UGGAC-CaGAa-----GCACAUG-----------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 96803 0.66 0.95222
Target:  5'- -gCUGGg--UCGggggGCGCGCAGCGg -3'
miRNA:   3'- ugGACCagaAGCaca-UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 97801 0.66 0.95222
Target:  5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3'
miRNA:   3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 99030 0.68 0.884988
Target:  5'- ---cGG-CUUCGUGgaagGCGCcCAGCGCg -3'
miRNA:   3'- uggaCCaGAAGCACa---UGUGcGUCGCG- -5'
6376 3' -54 NC_001847.1 + 99683 0.72 0.675438
Target:  5'- -gCUGG-CUUUGcg-GCGCGCGGCGCg -3'
miRNA:   3'- ugGACCaGAAGCacaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 101829 0.66 0.943482
Target:  5'- gGCC--GUCUUCgGUGUGCGcCGUuGCGCc -3'
miRNA:   3'- -UGGacCAGAAG-CACAUGU-GCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 102688 0.7 0.775739
Target:  5'- cGCgCUGG-CgggCGUGUGCuGCgGCAGCGCc -3'
miRNA:   3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 103882 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 105050 0.68 0.887796
Target:  5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3'
miRNA:   3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 105329 0.73 0.633742
Target:  5'- gACCUGcGUCgUCGUGgGCGCcGgGGCGCu -3'
miRNA:   3'- -UGGAC-CAGaAGCACaUGUG-CgUCGCG- -5'
6376 3' -54 NC_001847.1 + 107109 0.68 0.877076
Target:  5'- cGCC-GcGUCUggCGUGUGCAgGCgcucguaAGCGCg -3'
miRNA:   3'- -UGGaC-CAGAa-GCACAUGUgCG-------UCGCG- -5'
6376 3' -54 NC_001847.1 + 108490 1.11 0.002803
Target:  5'- uACCUGGUCUUCGUGUACACGCAGCGCu -3'
miRNA:   3'- -UGGACCAGAAGCACAUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 116363 0.66 0.943482
Target:  5'- -gCUGGUgUgCGUgGUGCugGC-GCGCu -3'
miRNA:   3'- ugGACCAgAaGCA-CAUGugCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 117393 0.68 0.870397
Target:  5'- gACCUcgcGGgUUUCG-GUGCGCGCGGUGg -3'
miRNA:   3'- -UGGA---CCaGAAGCaCAUGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 117704 0.67 0.92305
Target:  5'- cACCgaGGg---CGUGUACACuuGGCGCc -3'
miRNA:   3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5'
6376 3' -54 NC_001847.1 + 121717 0.66 0.938746
Target:  5'- ---cGGUCUUCacgGcGCGCGCuGGCGCg -3'
miRNA:   3'- uggaCCAGAAGca-CaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 122630 0.75 0.510461
Target:  5'- gACCUGGUCUUUGacgACGCGcCGGCuGCg -3'
miRNA:   3'- -UGGACCAGAAGCacaUGUGC-GUCG-CG- -5'
6376 3' -54 NC_001847.1 + 125415 0.66 0.943942
Target:  5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3'
miRNA:   3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 128207 0.85 0.154451
Target:  5'- cGCCUGGcccgUCUUCGUGUGCACcuucaaCAGCGCg -3'
miRNA:   3'- -UGGACC----AGAAGCACAUGUGc-----GUCGCG- -5'
6376 3' -54 NC_001847.1 + 130235 0.67 0.91732
Target:  5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3'
miRNA:   3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.