Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 74482 | 0.67 | 0.911341 |
Target: 5'- -gCUGGg---CGUGUugAUGCAGCaGCc -3' miRNA: 3'- ugGACCagaaGCACAugUGCGUCG-CG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 74124 | 0.67 | 0.898647 |
Target: 5'- cGCCcGGgga-UGUG-ACGCGCGGCGCc -3' miRNA: 3'- -UGGaCCagaaGCACaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 72858 | 0.71 | 0.726652 |
Target: 5'- uGCCUGGg---CGUGgacaucCACGCAGuCGCg -3' miRNA: 3'- -UGGACCagaaGCACau----GUGCGUC-GCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 72115 | 0.7 | 0.775739 |
Target: 5'- cGCCgUGGUCc-CGgccuucGCGCGCGGCGCg -3' miRNA: 3'- -UGG-ACCAGaaGCaca---UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 71056 | 0.66 | 0.943482 |
Target: 5'- uUCUGGaCguggaccCG-GUGCugGCGGCGCu -3' miRNA: 3'- uGGACCaGaa-----GCaCAUGugCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 70288 | 0.68 | 0.862764 |
Target: 5'- cGCCUGG-CggggUCGcg-GCGCGCcGCGCu -3' miRNA: 3'- -UGGACCaGa---AGCacaUGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 67731 | 0.71 | 0.74661 |
Target: 5'- aGCCUGGcCUcUCG-GcACACGCgccGGCGCa -3' miRNA: 3'- -UGGACCaGA-AGCaCaUGUGCG---UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66864 | 0.76 | 0.471426 |
Target: 5'- cGCCUcucGGgCUUCGUGUACGCGCccaaccgggAGUGCu -3' miRNA: 3'- -UGGA---CCaGAAGCACAUGUGCG---------UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66801 | 0.66 | 0.943482 |
Target: 5'- gUCUGGgcgUCG-GUAgGCGgGGCGCu -3' miRNA: 3'- uGGACCagaAGCaCAUgUGCgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66754 | 0.7 | 0.812661 |
Target: 5'- uCCUGGcCUUCGccggGCACGaAGCGCc -3' miRNA: 3'- uGGACCaGAAGCaca-UGUGCgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66748 | 0.71 | 0.74661 |
Target: 5'- uACCUGGccgagugCUUCGUGU-CGCuCGGCGUc -3' miRNA: 3'- -UGGACCa------GAAGCACAuGUGcGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 64088 | 0.66 | 0.938746 |
Target: 5'- cCCUcgaGGUgUUCGUGcuggACGugucCGCGGCGCc -3' miRNA: 3'- uGGA---CCAgAAGCACa---UGU----GCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 63304 | 0.67 | 0.898647 |
Target: 5'- cACCgGGUCcagcagcgCGUGguucaGCGCGGCGUg -3' miRNA: 3'- -UGGaCCAGaa------GCACaug--UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 60913 | 0.66 | 0.95222 |
Target: 5'- cACCUcGGggcaggCUUCGU--ACACGCgagccacauAGCGCg -3' miRNA: 3'- -UGGA-CCa-----GAAGCAcaUGUGCG---------UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 60630 | 0.68 | 0.862764 |
Target: 5'- cGCC-GcGUC-UCGUccaGCGCGCGGCGCa -3' miRNA: 3'- -UGGaC-CAGaAGCAca-UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 60033 | 0.67 | 0.92305 |
Target: 5'- uGCCgucGGccUCUUCGUcggGCGCgagGCGGCGCg -3' miRNA: 3'- -UGGa--CC--AGAAGCAca-UGUG---CGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 55692 | 0.69 | 0.846037 |
Target: 5'- gGCCgGGgaaaacucgcgcuUCUUCGUGUGCcCGCcgcccucgGGCGCc -3' miRNA: 3'- -UGGaCC-------------AGAAGCACAUGuGCG--------UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 55377 | 0.66 | 0.933763 |
Target: 5'- gACCUGGUUUcUG-GUGCcgcugaucGCGCuGGCGCu -3' miRNA: 3'- -UGGACCAGAaGCaCAUG--------UGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 54372 | 0.66 | 0.938746 |
Target: 5'- gGCCgGGUCguccCG-GUcCGCGCcGGCGCg -3' miRNA: 3'- -UGGaCCAGaa--GCaCAuGUGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 54036 | 0.66 | 0.95222 |
Target: 5'- uUCUGGaugUCcUCGUcgGCGCGCGGCGa -3' miRNA: 3'- uGGACC---AGaAGCAcaUGUGCGUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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