miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 3056 0.66 0.938746
Target:  5'- aGCCgcaggcgcaGGUUgugcUCGUaGUGCA-GCAGCGCg -3'
miRNA:   3'- -UGGa--------CCAGa---AGCA-CAUGUgCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 60913 0.66 0.95222
Target:  5'- cACCUcGGggcaggCUUCGU--ACACGCgagccacauAGCGCg -3'
miRNA:   3'- -UGGA-CCa-----GAAGCAcaUGUGCG---------UCGCG- -5'
6376 3' -54 NC_001847.1 + 72115 0.7 0.775739
Target:  5'- cGCCgUGGUCc-CGgccuucGCGCGCGGCGCg -3'
miRNA:   3'- -UGG-ACCAGaaGCaca---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 35950 0.69 0.821486
Target:  5'- cGCCUGGg---CGc-UGCugGCGGCGCu -3'
miRNA:   3'- -UGGACCagaaGCacAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 93664 0.66 0.943482
Target:  5'- aGCUg---CUUCGUGcGCAUGCcGCGCg -3'
miRNA:   3'- -UGGaccaGAAGCACaUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 42061 0.67 0.928531
Target:  5'- uGCCUGGggCUg---GUGcCGCuGCGGCGCa -3'
miRNA:   3'- -UGGACCa-GAagcaCAU-GUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 97801 0.66 0.95222
Target:  5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3'
miRNA:   3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 78541 0.67 0.92305
Target:  5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3'
miRNA:   3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 19616 0.67 0.92305
Target:  5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3'
miRNA:   3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 117704 0.67 0.92305
Target:  5'- cACCgaGGg---CGUGUACACuuGGCGCc -3'
miRNA:   3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5'
6376 3' -54 NC_001847.1 + 1069 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 102688 0.7 0.775739
Target:  5'- cGCgCUGG-CgggCGUGUGCuGCgGCAGCGCc -3'
miRNA:   3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 14624 0.68 0.884988
Target:  5'- cACgUGGUUUUCG---AC-CGCGGCGCu -3'
miRNA:   3'- -UGgACCAGAAGCacaUGuGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 99030 0.68 0.884988
Target:  5'- ---cGG-CUUCGUGgaagGCGCcCAGCGCg -3'
miRNA:   3'- uggaCCaGAAGCACa---UGUGcGUCGCG- -5'
6376 3' -54 NC_001847.1 + 2237 0.68 0.887796
Target:  5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3'
miRNA:   3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 63304 0.67 0.898647
Target:  5'- cACCgGGUCcagcagcgCGUGguucaGCGCGGCGUg -3'
miRNA:   3'- -UGGaCCAGaa------GCACaug--UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 37053 0.7 0.766151
Target:  5'- aGCCUGGgCUgggggCGgcugGUGCACGCGGUa- -3'
miRNA:   3'- -UGGACCaGAa----GCa---CAUGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 133456 0.71 0.756438
Target:  5'- cCCUGGUUccCGUGUACAUGCA-CGg -3'
miRNA:   3'- uGGACCAGaaGCACAUGUGCGUcGCg -5'
6376 3' -54 NC_001847.1 + 107109 0.68 0.877076
Target:  5'- cGCC-GcGUCUggCGUGUGCAgGCgcucguaAGCGCg -3'
miRNA:   3'- -UGGaC-CAGAa-GCACAUGUgCG-------UCGCG- -5'
6376 3' -54 NC_001847.1 + 27422 0.67 0.91732
Target:  5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3'
miRNA:   3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.