miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 74124 0.67 0.898647
Target:  5'- cGCCcGGgga-UGUG-ACGCGCGGCGCc -3'
miRNA:   3'- -UGGaCCagaaGCACaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 66748 0.71 0.74661
Target:  5'- uACCUGGccgagugCUUCGUGU-CGCuCGGCGUc -3'
miRNA:   3'- -UGGACCa------GAAGCACAuGUGcGUCGCG- -5'
6376 3' -54 NC_001847.1 + 72858 0.71 0.726652
Target:  5'- uGCCUGGg---CGUGgacaucCACGCAGuCGCg -3'
miRNA:   3'- -UGGACCagaaGCACau----GUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 105329 0.73 0.633742
Target:  5'- gACCUGcGUCgUCGUGgGCGCcGgGGCGCu -3'
miRNA:   3'- -UGGAC-CAGaAGCACaUGUG-CgUCGCG- -5'
6376 3' -54 NC_001847.1 + 31932 0.73 0.612851
Target:  5'- gGCCccGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3'
miRNA:   3'- -UGGa-CCAGA---AGCa------CA---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 33319 0.74 0.56102
Target:  5'- aGCCUGuUgUUCGUGgcgGCGCGCuGCGUg -3'
miRNA:   3'- -UGGACcAgAAGCACa--UGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 66864 0.76 0.471426
Target:  5'- cGCCUcucGGgCUUCGUGUACGCGCccaaccgggAGUGCu -3'
miRNA:   3'- -UGGA---CCaGAAGCACAUGUGCG---------UCGCG- -5'
6376 3' -54 NC_001847.1 + 131101 0.74 0.56102
Target:  5'- cACCgUGGaUCUcUCGgg-GCGCGCGGCGCg -3'
miRNA:   3'- -UGG-ACC-AGA-AGCacaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 128207 0.85 0.154451
Target:  5'- cGCCUGGcccgUCUUCGUGUGCACcuucaaCAGCGCg -3'
miRNA:   3'- -UGGACC----AGAAGCACAUGUGc-----GUCGCG- -5'
6376 3' -54 NC_001847.1 + 67731 0.71 0.74661
Target:  5'- aGCCUGGcCUcUCG-GcACACGCgccGGCGCa -3'
miRNA:   3'- -UGGACCaGA-AGCaCaUGUGCG---UCGCG- -5'
6376 3' -54 NC_001847.1 + 133456 0.71 0.756438
Target:  5'- cCCUGGUUccCGUGUACAUGCA-CGg -3'
miRNA:   3'- uGGACCAGaaGCACAUGUGCGUcGCg -5'
6376 3' -54 NC_001847.1 + 37053 0.7 0.766151
Target:  5'- aGCCUGGgCUgggggCGgcugGUGCACGCGGUa- -3'
miRNA:   3'- -UGGACCaGAa----GCa---CAUGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 63304 0.67 0.898647
Target:  5'- cACCgGGUCcagcagcgCGUGguucaGCGCGGCGUg -3'
miRNA:   3'- -UGGaCCAGaa------GCACaug--UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 2237 0.68 0.887796
Target:  5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3'
miRNA:   3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 99030 0.68 0.884988
Target:  5'- ---cGG-CUUCGUGgaagGCGCcCAGCGCg -3'
miRNA:   3'- uggaCCaGAAGCACa---UGUGcGUCGCG- -5'
6376 3' -54 NC_001847.1 + 14624 0.68 0.884988
Target:  5'- cACgUGGUUUUCG---AC-CGCGGCGCu -3'
miRNA:   3'- -UGgACCAGAAGCacaUGuGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 107109 0.68 0.877076
Target:  5'- cGCC-GcGUCUggCGUGUGCAgGCgcucguaAGCGCg -3'
miRNA:   3'- -UGGaC-CAGAa-GCACAUGUgCG-------UCGCG- -5'
6376 3' -54 NC_001847.1 + 1069 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 35950 0.69 0.821486
Target:  5'- cGCCUGGg---CGc-UGCugGCGGCGCu -3'
miRNA:   3'- -UGGACCagaaGCacAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 102688 0.7 0.775739
Target:  5'- cGCgCUGG-CgggCGUGUGCuGCgGCAGCGCc -3'
miRNA:   3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.