miRNA: 3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
miRNA: 3'- -UGGACCagaaGCacAUGugCGUCGCG- -5'
miRNA: 3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5'
miRNA: 3'- -UGGACCAGAAGCACAUGUGCGUCGCG- -5'
Results 101 - 104 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6376 | 3' | -54 | NC_001847.1 | + | 1069 | 0.69 | 0.830133 |
|
Target: 5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3' miRNA: 3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5' |
|||||||
| 6376 | 3' | -54 | NC_001847.1 | + | 35950 | 0.69 | 0.821486 |
|
Target: 5'- cGCCUGGg---CGc-UGCugGCGGCGCu -3' miRNA: 3'- -UGGACCagaaGCacAUGugCGUCGCG- -5' |
|||||||
| 6376 | 3' | -54 | NC_001847.1 | + | 102688 | 0.7 | 0.775739 |
|
Target: 5'- cGCgCUGG-CgggCGUGUGCuGCgGCAGCGCc -3' miRNA: 3'- -UG-GACCaGaa-GCACAUG-UG-CGUCGCG- -5' |
|||||||
| 6376 | 3' | -54 | NC_001847.1 | + | 108490 | 1.11 | 0.002803 |
|
Target: 5'- uACCUGGUCUUCGUGUACACGCAGCGCu -3' miRNA: 3'- -UGGACCAGAAGCACAUGUGCGUCGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home