Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 52285 | 0.72 | 0.665047 |
Target: 5'- cGCC-GG-CUUUGUGUGCGCGaccgcgGGCGCg -3' miRNA: 3'- -UGGaCCaGAAGCACAUGUGCg-----UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 31062 | 0.73 | 0.602424 |
Target: 5'- cGCCgcugugGGUUUUCGcaaccaGUACgACGCGGCGCu -3' miRNA: 3'- -UGGa-----CCAGAAGCa-----CAUG-UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 134746 | 0.73 | 0.602424 |
Target: 5'- cCCUcGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3' miRNA: 3'- uGGA-CCAGA---AGCa------CA---UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 26772 | 0.74 | 0.55078 |
Target: 5'- gGCCUGGUCa--GUGcGCGCGCccuccuGCGCg -3' miRNA: 3'- -UGGACCAGaagCACaUGUGCGu-----CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 122630 | 0.75 | 0.510461 |
Target: 5'- gACCUGGUCUUUGacgACGCGcCGGCuGCg -3' miRNA: 3'- -UGGACCAGAAGCacaUGUGC-GUCG-CG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 16616 | 0.69 | 0.821486 |
Target: 5'- uGCgUGGUCUUUGgggGgGgGCGCGGCGg -3' miRNA: 3'- -UGgACCAGAAGCa--CaUgUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 37036 | 0.69 | 0.821486 |
Target: 5'- gACCUGG---UCGUGgcCGCGCucaugGGCGCc -3' miRNA: 3'- -UGGACCagaAGCACauGUGCG-----UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 117393 | 0.68 | 0.870397 |
Target: 5'- gACCUcgcGGgUUUCG-GUGCGCGCGGUGg -3' miRNA: 3'- -UGGA---CCaGAAGCaCAUGUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 49221 | 0.68 | 0.869643 |
Target: 5'- gGCCcgcgGG-CUUCGUGUACgucugcgACGCGGCu- -3' miRNA: 3'- -UGGa---CCaGAAGCACAUG-------UGCGUCGcg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 60630 | 0.68 | 0.862764 |
Target: 5'- cGCC-GcGUC-UCGUccaGCGCGCGGCGCa -3' miRNA: 3'- -UGGaC-CAGaAGCAca-UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 70288 | 0.68 | 0.862764 |
Target: 5'- cGCCUGG-CggggUCGcg-GCGCGCcGCGCu -3' miRNA: 3'- -UGGACCaGa---AGCacaUGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 35918 | 0.68 | 0.862764 |
Target: 5'- cGCgUGGgagcCUUUGUGgcgGCGCGCcgccGCGCg -3' miRNA: 3'- -UGgACCa---GAAGCACa--UGUGCGu---CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 20759 | 0.68 | 0.862764 |
Target: 5'- gGCCUcGcCUUCGUcgGCGCGCAGaUGCg -3' miRNA: 3'- -UGGAcCaGAAGCAcaUGUGCGUC-GCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 83349 | 0.69 | 0.854914 |
Target: 5'- -gCUGGUCUgcgacCGgg-ACGCGCGGgGCg -3' miRNA: 3'- ugGACCAGAa----GCacaUGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 30237 | 0.69 | 0.854914 |
Target: 5'- gGCCgaGGUgcgCGUGUcGCugGCGGCGUu -3' miRNA: 3'- -UGGa-CCAgaaGCACA-UGugCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 55692 | 0.69 | 0.846037 |
Target: 5'- gGCCgGGgaaaacucgcgcuUCUUCGUGUGCcCGCcgcccucgGGCGCc -3' miRNA: 3'- -UGGaCC-------------AGAAGCACAUGuGCG--------UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 5859 | 0.69 | 0.838591 |
Target: 5'- cGCCUGGcCcUCGagGUgguccagcgcuGCGCGCAGgGCg -3' miRNA: 3'- -UGGACCaGaAGCa-CA-----------UGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 30187 | 0.69 | 0.838591 |
Target: 5'- gACCUGGcCgacgCG-GUGCGCGgCGcGCGCg -3' miRNA: 3'- -UGGACCaGaa--GCaCAUGUGC-GU-CGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 86526 | 0.69 | 0.838591 |
Target: 5'- -gCUGGgCgccCGcGUGCugGCGGCGCg -3' miRNA: 3'- ugGACCaGaa-GCaCAUGugCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 103882 | 0.69 | 0.830133 |
Target: 5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3' miRNA: 3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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