miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 93341 0.66 0.938746
Target:  5'- cGCCacGUCcUCGUa-GCGCGCGGCGUu -3'
miRNA:   3'- -UGGacCAGaAGCAcaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 3056 0.66 0.938746
Target:  5'- aGCCgcaggcgcaGGUUgugcUCGUaGUGCA-GCAGCGCg -3'
miRNA:   3'- -UGGa--------CCAGa---AGCA-CAUGUgCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 121717 0.66 0.938746
Target:  5'- ---cGGUCUUCacgGcGCGCGCuGGCGCg -3'
miRNA:   3'- uggaCCAGAAGca-CaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 41720 0.66 0.933763
Target:  5'- gGCCaGGg---CGUGUACAgCGCcguGCGCu -3'
miRNA:   3'- -UGGaCCagaaGCACAUGU-GCGu--CGCG- -5'
6376 3' -54 NC_001847.1 + 55377 0.66 0.933763
Target:  5'- gACCUGGUUUcUG-GUGCcgcugaucGCGCuGGCGCu -3'
miRNA:   3'- -UGGACCAGAaGCaCAUG--------UGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 47857 0.66 0.933763
Target:  5'- ---aGGUCg-CGUGcugcgcgggcGCGCGCAGCGCg -3'
miRNA:   3'- uggaCCAGaaGCACa---------UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 29413 0.66 0.933763
Target:  5'- aACCUGGUUUgacc-UGCGCGCcagcgAGCGCu -3'
miRNA:   3'- -UGGACCAGAagcacAUGUGCG-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 81505 0.67 0.928531
Target:  5'- uGCCcGGUCUUUGUcgcggACGCGagucuGCGCa -3'
miRNA:   3'- -UGGaCCAGAAGCAca---UGUGCgu---CGCG- -5'
6376 3' -54 NC_001847.1 + 42061 0.67 0.928531
Target:  5'- uGCCUGGggCUg---GUGcCGCuGCGGCGCa -3'
miRNA:   3'- -UGGACCa-GAagcaCAU-GUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 82330 0.67 0.928531
Target:  5'- cGCCcgaGGUCca-GUGU--GCGCGGCGCc -3'
miRNA:   3'- -UGGa--CCAGaagCACAugUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 60033 0.67 0.92305
Target:  5'- uGCCgucGGccUCUUCGUcggGCGCgagGCGGCGCg -3'
miRNA:   3'- -UGGa--CC--AGAAGCAca-UGUG---CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 7243 0.67 0.92305
Target:  5'- -gCUGGUCgggUgGcUGUGCggGCGCGGCGg -3'
miRNA:   3'- ugGACCAGa--AgC-ACAUG--UGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 23860 0.67 0.92305
Target:  5'- -gCUGGcCUcgcgCGUaaaGUGCuuuCGCAGCGCg -3'
miRNA:   3'- ugGACCaGAa---GCA---CAUGu--GCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 3973 0.67 0.92305
Target:  5'- cGCgaGGUgggcCGUGaGCACGCcAGCGCg -3'
miRNA:   3'- -UGgaCCAgaa-GCACaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 78541 0.67 0.92305
Target:  5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3'
miRNA:   3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 19616 0.67 0.92305
Target:  5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3'
miRNA:   3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 117704 0.67 0.92305
Target:  5'- cACCgaGGg---CGUGUACACuuGGCGCc -3'
miRNA:   3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5'
6376 3' -54 NC_001847.1 + 88533 0.67 0.92305
Target:  5'- cCCUcGUaaacgUGUGUGCGCGUGGCGUg -3'
miRNA:   3'- uGGAcCAgaa--GCACAUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 130235 0.67 0.91732
Target:  5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3'
miRNA:   3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 13739 0.67 0.91732
Target:  5'- uCCUGGg---CGUGgggcugauCGCGCAGCGg -3'
miRNA:   3'- uGGACCagaaGCACau------GUGCGUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.