miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 21397 0.66 0.679991
Target:  5'- gGAGGGgaUUCGgGCCgGCcgaggauucgGGCCGg -3'
miRNA:   3'- -CUCCCgaAAGCgCGGgUGca--------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 46481 0.66 0.679991
Target:  5'- cAGGGCcUUCcaCGUCgcaGCGUGGCCGa -3'
miRNA:   3'- cUCCCGaAAGc-GCGGg--UGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98940 0.66 0.650008
Target:  5'- gGAGGGCg--CGCaGCCCcucguACGcGGCCu- -3'
miRNA:   3'- -CUCCCGaaaGCG-CGGG-----UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 73235 0.66 0.645996
Target:  5'- gGGGGGCggcggcgcgggCGCGCUCGa--GGCCGUg -3'
miRNA:   3'- -CUCCCGaaa--------GCGCGGGUgcaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 57771 0.66 0.669025
Target:  5'- cGGGGCUgcugGUGCUCGCcgggcugGUGGCCGc -3'
miRNA:   3'- cUCCCGAaag-CGCGGGUG-------CACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 14529 0.66 0.619901
Target:  5'- cGGcGGCgcUCGCuGCCCGCGgugccGCCGUa -3'
miRNA:   3'- cUC-CCGaaAGCG-CGGGUGCac---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 127031 0.66 0.619901
Target:  5'- uGGGGCcc-CGCGCCUGCGcUGGCg-- -3'
miRNA:   3'- cUCCCGaaaGCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 96612 0.66 0.619901
Target:  5'- -cGGGUUUUccuugCGCGUgCGCGggGGCCGg -3'
miRNA:   3'- cuCCCGAAA-----GCGCGgGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 28418 0.66 0.62793
Target:  5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3'
miRNA:   3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 44033 0.66 0.629938
Target:  5'- aGAGGGCUgcagCGagGCgCGCGUcggGGCCGc -3'
miRNA:   3'- -CUCCCGAaa--GCg-CGgGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 87595 0.66 0.629938
Target:  5'- -cGGGCUcccCGCGCCCGcCGUG-CUGg -3'
miRNA:   3'- cuCCCGAaa-GCGCGGGU-GCACcGGCa -5'
6376 5' -60.9 NC_001847.1 + 128817 0.66 0.639976
Target:  5'- cGGGGCaccCGCGU--ACGUGGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCGggUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 116712 0.66 0.639976
Target:  5'- --cGGCUggcCGCGgCgCACGUGGCCa- -3'
miRNA:   3'- cucCCGAaa-GCGCgG-GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 56797 0.66 0.679991
Target:  5'- ---cGUUcgUCGCGCUCACGgGGCCGg -3'
miRNA:   3'- cuccCGAa-AGCGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 59347 0.66 0.629938
Target:  5'- cGGcGGCgaggUCGCGCgCCGCGccgagcccgcGGCCGUg -3'
miRNA:   3'- cUC-CCGaa--AGCGCG-GGUGCa---------CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 29569 0.66 0.629938
Target:  5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 135011 0.67 0.56999
Target:  5'- cGGGGCc--CGagGCCCGCGggcggGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCg-CGGGUGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 3425 0.67 0.579914
Target:  5'- cGGGGGCgccaggCGCaGCCCAgGgGGUCGa -3'
miRNA:   3'- -CUCCCGaaa---GCG-CGGGUgCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 89883 0.67 0.599862
Target:  5'- -cGGGCUUcgcCGCGCUCACGccGGCgGc -3'
miRNA:   3'- cuCCCGAAa--GCGCGGGUGCa-CCGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.