Results 101 - 120 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 5' | -60.9 | NC_001847.1 | + | 32273 | 0.68 | 0.511535 |
Target: 5'- -cGuGGCUcgCGcCGUCCGCGUGGCgCGg -3' miRNA: 3'- cuC-CCGAaaGC-GCGGGUGCACCG-GCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 124924 | 0.68 | 0.511535 |
Target: 5'- cGGGGGCgacagcgggCGCGCCCugGgcccGGCgGc -3' miRNA: 3'- -CUCCCGaaa------GCGCGGGugCa---CCGgCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 32140 | 0.68 | 0.521121 |
Target: 5'- -uGGGCgccgcCGCGCCCGCGcacGCCGc -3' miRNA: 3'- cuCCCGaaa--GCGCGGGUGCac-CGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 121756 | 0.68 | 0.521121 |
Target: 5'- -cGGGCccgcggCGCGCCCggACGUGcgcGCCGUu -3' miRNA: 3'- cuCCCGaaa---GCGCGGG--UGCAC---CGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 91731 | 0.68 | 0.502022 |
Target: 5'- cGAGGcccaGCUgcaGCGCCCugcgcGCGUcGGCCGUg -3' miRNA: 3'- -CUCC----CGAaagCGCGGG-----UGCA-CCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 128002 | 0.68 | 0.520159 |
Target: 5'- -cGGGUUUUCGCugaugcuGCUCACG-GGCCa- -3' miRNA: 3'- cuCCCGAAAGCG-------CGGGUGCaCCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 130940 | 0.68 | 0.540497 |
Target: 5'- cAGGGCUUUgGCuGCCUGCGcgcGGCCc- -3' miRNA: 3'- cUCCCGAAAgCG-CGGGUGCa--CCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 27696 | 0.68 | 0.521121 |
Target: 5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3' miRNA: 3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 2561 | 0.68 | 0.550277 |
Target: 5'- -cGGGCUgUCuucggcgcggGCGCCUGCGcGGCCGc -3' miRNA: 3'- cuCCCGAaAG----------CGCGGGUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 111364 | 0.68 | 0.549296 |
Target: 5'- -uGGGCgaccUCGCGCCCGgGcauccgcUGGCCa- -3' miRNA: 3'- cuCCCGaa--AGCGCGGGUgC-------ACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 128032 | 0.68 | 0.550277 |
Target: 5'- gGAGGaGCccggccgUgGCGCCUACGUGGUCu- -3' miRNA: 3'- -CUCC-CGaa-----AgCGCGGGUGCACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 52977 | 0.68 | 0.550277 |
Target: 5'- cGAGGGCcgcgUCGCGCa---GUGGCCc- -3' miRNA: 3'- -CUCCCGaa--AGCGCGggugCACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 22111 | 0.68 | 0.511535 |
Target: 5'- cGGGGGCgacagcgggCGCGCCCugGgcccGGCgGc -3' miRNA: 3'- -CUCCCGaaa------GCGCGGGugCa---CCGgCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 102801 | 0.68 | 0.537575 |
Target: 5'- cGGGGGCUgggcccccuccgcgcCGCGCCgCGCG-GGCCc- -3' miRNA: 3'- -CUCCCGAaa-------------GCGCGG-GUGCaCCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 30260 | 0.68 | 0.51058 |
Target: 5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3' miRNA: 3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 46531 | 0.68 | 0.508673 |
Target: 5'- gGGGGGCggcggcggCGCGCgcgagguccuccagCCGCGcGGCCGUu -3' miRNA: 3'- -CUCCCGaaa-----GCGCG--------------GGUGCaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 39626 | 0.68 | 0.530777 |
Target: 5'- aGGGGCaagccuggCGCGCCCGCcaGGCCc- -3' miRNA: 3'- cUCCCGaaa-----GCGCGGGUGcaCCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 102607 | 0.68 | 0.499183 |
Target: 5'- cGAGGGCUgcgCGCGCaucgccuccgacagCCGCGUguacgcGGCCa- -3' miRNA: 3'- -CUCCCGAaa-GCGCG--------------GGUGCA------CCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 44247 | 0.68 | 0.550277 |
Target: 5'- uGGGGCUgagCGCGCCgGCGacugGGCa-- -3' miRNA: 3'- cUCCCGAaa-GCGCGGgUGCa---CCGgca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 40871 | 0.68 | 0.550277 |
Target: 5'- -cGGGC----GCGCCCaaugcGCGUGGUCGUa -3' miRNA: 3'- cuCCCGaaagCGCGGG-----UGCACCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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