miRNA display CGI


Results 21 - 40 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 61943 0.7 0.420376
Target:  5'- cAGcGGCgg-CGCgGCCCGCGcgGGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCG-CGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 3917 0.7 0.411804
Target:  5'- -cGGGCgccgguugCGCGCCCGCGcUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-----GCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 97322 0.7 0.403341
Target:  5'- cAGGcGCgucggcgUCGCGCCCGCccGGCCGc -3'
miRNA:   3'- cUCC-CGaa-----AGCGCGGGUGcaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 70532 0.7 0.420376
Target:  5'- -uGGGCgg-CGUGCUgGCGcUGGCCGa -3'
miRNA:   3'- cuCCCGaaaGCGCGGgUGC-ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 65332 0.7 0.403341
Target:  5'- aGAGGGCgucaaagGCGgCCGCGUacaGGCCGUu -3'
miRNA:   3'- -CUCCCGaaag---CGCgGGUGCA---CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 105350 0.7 0.403341
Target:  5'- cGGGGCgcUCGCGUCCACaaacGGCCa- -3'
miRNA:   3'- cUCCCGaaAGCGCGGGUGca--CCGGca -5'
6376 5' -60.9 NC_001847.1 + 47687 0.7 0.403341
Target:  5'- -cGGGCg--CGCG-CCGCGgGGCCGUu -3'
miRNA:   3'- cuCCCGaaaGCGCgGGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 76902 0.7 0.43784
Target:  5'- gGAGGGCggUCGCGCgCCGCcgcuGCCGc -3'
miRNA:   3'- -CUCCCGaaAGCGCG-GGUGcac-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 98170 0.7 0.420376
Target:  5'- -cGGGCccgcUCgccgGCGCCCGCGcUGGCCGc -3'
miRNA:   3'- cuCCCGaa--AG----CGCGGGUGC-ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 80552 0.7 0.432557
Target:  5'- -cGGGCgcgCGCcgccagcgccgcccaGCCCGCGgGGCCGUc -3'
miRNA:   3'- cuCCCGaaaGCG---------------CGGGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 4184 0.7 0.43784
Target:  5'- -uGGGCcg-CGCGCCCGUG-GGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 106730 0.7 0.411804
Target:  5'- -cGGGCgccgguugCGCGCCCGCGcUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-----GCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 42742 0.7 0.394988
Target:  5'- -cGGGCUg--GCGCCCcccuGgGUGGCCGa -3'
miRNA:   3'- cuCCCGAaagCGCGGG----UgCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32826 0.7 0.394988
Target:  5'- cGAGcGCg--CGagGCCCGCGUGGCCGc -3'
miRNA:   3'- -CUCcCGaaaGCg-CGGGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 15834 0.7 0.394988
Target:  5'- cGAGGGCgaaUUCGCGCCUuugcccucgGCGUucGCCGa -3'
miRNA:   3'- -CUCCCGa--AAGCGCGGG---------UGCAc-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 125079 0.69 0.483236
Target:  5'- cGGGGCgc-UGgGCCCGCGcGGCCa- -3'
miRNA:   3'- cUCCCGaaaGCgCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 130867 0.69 0.464794
Target:  5'- --cGGCg--CGCGCCU-CGUGGCCGc -3'
miRNA:   3'- cucCCGaaaGCGCGGGuGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98876 0.69 0.483236
Target:  5'- aAGGGCgcgUGCGCCUggGCGgcccaGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCGCGGG--UGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 38225 0.69 0.483236
Target:  5'- -cGGGCcg-CGCGCCUcuACGcGGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 42318 0.69 0.47397
Target:  5'- aGAGGGCgagugUUUcgugcuguggGCGCCCGUGUGGCgCGg -3'
miRNA:   3'- -CUCCCGa----AAG----------CGCGGGUGCACCG-GCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.