miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 21872 0.69 0.483236
Target:  5'- cGGGGGCUgcggCGCGCUgcCGaGGCCGa -3'
miRNA:   3'- -CUCCCGAaa--GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 133887 0.69 0.492588
Target:  5'- uGGGGGCUcggCGCGCCgcUGcGGCCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 89757 0.69 0.479519
Target:  5'- -cGGGCUgcggcacgugcaCGCGCCgGCGUacgaGGCCGUc -3'
miRNA:   3'- cuCCCGAaa----------GCGCGGgUGCA----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 38225 0.69 0.483236
Target:  5'- -cGGGCcg-CGCGCCUcuACGcGGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 52920 0.69 0.446726
Target:  5'- cAGcGGCUcgggGCGCCCGCGaaGGCCGUg -3'
miRNA:   3'- cUC-CCGAaag-CGCGGGUGCa-CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 42318 0.69 0.47397
Target:  5'- aGAGGGCgagugUUUcgugcuguggGCGCCCGUGUGGCgCGg -3'
miRNA:   3'- -CUCCCGa----AAG----------CGCGGGUGCACCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 125079 0.69 0.483236
Target:  5'- cGGGGCgc-UGgGCCCGCGcGGCCa- -3'
miRNA:   3'- cUCCCGaaaGCgCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 116173 0.69 0.455712
Target:  5'- -cGGGCgc-CGCGgCCGCGcUGGUCGUc -3'
miRNA:   3'- cuCCCGaaaGCGCgGGUGC-ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 103116 0.69 0.446726
Target:  5'- cGGGGGCUUcccCGCGCgaGCGcgGGCCGc -3'
miRNA:   3'- -CUCCCGAAa--GCGCGggUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 19010 0.69 0.455712
Target:  5'- -cGGGCcg-CGCGCCCcaGCGcccGGCCGa -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCa--CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 84681 0.69 0.464794
Target:  5'- ---uGCUgUCGCGCggcgcUCACGUGGCCGUa -3'
miRNA:   3'- cuccCGAaAGCGCG-----GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 56336 0.69 0.47397
Target:  5'- cGAGGGCUacuacaagCGCGacauggCCACG-GGCCGg -3'
miRNA:   3'- -CUCCCGAaa------GCGCg-----GGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 59904 0.69 0.47397
Target:  5'- gGAGGGCggcgCGCGCgCGCGgcgaGaGCCGg -3'
miRNA:   3'- -CUCCCGaaa-GCGCGgGUGCa---C-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 130867 0.69 0.464794
Target:  5'- --cGGCg--CGCGCCU-CGUGGCCGc -3'
miRNA:   3'- cucCCGaaaGCGCGGGuGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 102607 0.68 0.499183
Target:  5'- cGAGGGCUgcgCGCGCaucgccuccgacagCCGCGUguacgcGGCCa- -3'
miRNA:   3'- -CUCCCGAaa-GCGCG--------------GGUGCA------CCGGca -5'
6376 5' -60.9 NC_001847.1 + 46531 0.68 0.508673
Target:  5'- gGGGGGCggcggcggCGCGCgcgagguccuccagCCGCGcGGCCGUu -3'
miRNA:   3'- -CUCCCGaaa-----GCGCG--------------GGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 30260 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 128002 0.68 0.520159
Target:  5'- -cGGGUUUUCGCugaugcuGCUCACG-GGCCa- -3'
miRNA:   3'- cuCCCGAAAGCG-------CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 27696 0.68 0.521121
Target:  5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3'
miRNA:   3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 22111 0.68 0.511535
Target:  5'- cGGGGGCgacagcgggCGCGCCCugGgcccGGCgGc -3'
miRNA:   3'- -CUCCCGaaa------GCGCGGGugCa---CCGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.