miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 39626 0.68 0.530777
Target:  5'- aGGGGCaagccuggCGCGCCCGCcaGGCCc- -3'
miRNA:   3'- cUCCCGaaa-----GCGCGGGUGcaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 27076 0.68 0.511535
Target:  5'- -cGGGCggcacCGCGCCCACGcUGGaggCGUc -3'
miRNA:   3'- cuCCCGaaa--GCGCGGGUGC-ACCg--GCA- -5'
6376 5' -60.9 NC_001847.1 + 133073 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 80003 0.68 0.502022
Target:  5'- gGGGGGCUcuaCGCGCgCGCGUuuGGCgCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGgGUGCA--CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 91731 0.68 0.502022
Target:  5'- cGAGGcccaGCUgcaGCGCCCugcgcGCGUcGGCCGUg -3'
miRNA:   3'- -CUCC----CGAaagCGCGGG-----UGCA-CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 70676 0.68 0.500129
Target:  5'- uGGGGCUggaggggaccgCGgGCCCGgGgcUGGCCGUg -3'
miRNA:   3'- cUCCCGAaa---------GCgCGGGUgC--ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 130940 0.68 0.540497
Target:  5'- cAGGGCUUUgGCuGCCUGCGcgcGGCCc- -3'
miRNA:   3'- cUCCCGAAAgCG-CGGGUGCa--CCGGca -5'
6376 5' -60.9 NC_001847.1 + 25318 0.68 0.540497
Target:  5'- cGAGGGC----GCGCCCAaa-GGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGGUgcaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 121756 0.68 0.521121
Target:  5'- -cGGGCccgcggCGCGCCCggACGUGcgcGCCGUu -3'
miRNA:   3'- cuCCCGaaa---GCGCGGG--UGCAC---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 130509 0.68 0.521121
Target:  5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3'
miRNA:   3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 46531 0.68 0.508673
Target:  5'- gGGGGGCggcggcggCGCGCgcgagguccuccagCCGCGcGGCCGUu -3'
miRNA:   3'- -CUCCCGaaa-----GCGCG--------------GGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 30260 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 22111 0.68 0.511535
Target:  5'- cGGGGGCgacagcgggCGCGCCCugGgcccGGCgGc -3'
miRNA:   3'- -CUCCCGaaa------GCGCGGGugCa---CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 128002 0.68 0.520159
Target:  5'- -cGGGUUUUCGCugaugcuGCUCACG-GGCCa- -3'
miRNA:   3'- cuCCCGAAAGCG-------CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 27696 0.68 0.521121
Target:  5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3'
miRNA:   3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 111364 0.68 0.549296
Target:  5'- -uGGGCgaccUCGCGCCCGgGcauccgcUGGCCa- -3'
miRNA:   3'- cuCCCGaa--AGCGCGGGUgC-------ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 52977 0.68 0.550277
Target:  5'- cGAGGGCcgcgUCGCGCa---GUGGCCc- -3'
miRNA:   3'- -CUCCCGaa--AGCGCGggugCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 30702 0.68 0.521121
Target:  5'- cGAGGGCagcccggCGCuccuggacGCCCgcgcggACGUGGCCGa -3'
miRNA:   3'- -CUCCCGaaa----GCG--------CGGG------UGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 5030 0.68 0.521121
Target:  5'- cGAGGGCgcucUCGUacucgucccaGCCCGCGUcgcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGCG----------CGGGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 29444 0.68 0.540497
Target:  5'- uGGGGCguggCGcCGCCCGC--GGCCGa -3'
miRNA:   3'- cUCCCGaaa-GC-GCGGGUGcaCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.