miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 128002 0.68 0.520159
Target:  5'- -cGGGUUUUCGCugaugcuGCUCACG-GGCCa- -3'
miRNA:   3'- cuCCCGAAAGCG-------CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 22111 0.68 0.511535
Target:  5'- cGGGGGCgacagcgggCGCGCCCugGgcccGGCgGc -3'
miRNA:   3'- -CUCCCGaaa------GCGCGGGugCa---CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 44247 0.68 0.550277
Target:  5'- uGGGGCUgagCGCGCCgGCGacugGGCa-- -3'
miRNA:   3'- cUCCCGAaa-GCGCGGgUGCa---CCGgca -5'
6376 5' -60.9 NC_001847.1 + 30260 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 111364 0.68 0.549296
Target:  5'- -uGGGCgaccUCGCGCCCGgGcauccgcUGGCCa- -3'
miRNA:   3'- cuCCCGaa--AGCGCGGGUgC-------ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 128077 0.67 0.579914
Target:  5'- cGGGcGGCUcgccgCGUGCCUugGUGGCg-- -3'
miRNA:   3'- -CUC-CCGAaa---GCGCGGGugCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 38504 0.67 0.579914
Target:  5'- gGGGGGCgg-CGCggucGCCgGCGcugugcucUGGCCGUa -3'
miRNA:   3'- -CUCCCGaaaGCG----CGGgUGC--------ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 18220 0.67 0.567022
Target:  5'- -cGGGCUgugcggcucucggcgCGUGCUCGCGUGGCg-- -3'
miRNA:   3'- cuCCCGAaa-------------GCGCGGGUGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 131764 0.67 0.569
Target:  5'- gGAGGGCUUUgCGCGgCUcggcgcgcggauuGCGgcGGCCGg -3'
miRNA:   3'- -CUCCCGAAA-GCGCgGG-------------UGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 117336 0.67 0.56999
Target:  5'- gGGGGGCggccUCGCcCCC-CGcGGCCGa -3'
miRNA:   3'- -CUCCCGaa--AGCGcGGGuGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 28331 0.67 0.579914
Target:  5'- -cGGGCccggCGC-CCCGCGgGGCCGc -3'
miRNA:   3'- cuCCCGaaa-GCGcGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32034 0.67 0.577926
Target:  5'- cGGGGCgcggggacgGCGCCCGCGcgGGCuCGg -3'
miRNA:   3'- cUCCCGaaag-----CGCGGGUGCa-CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 69383 0.67 0.56999
Target:  5'- -cGGcGCgcagcUUGCGCCCGCG-GGCCa- -3'
miRNA:   3'- cuCC-CGaa---AGCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 76868 0.67 0.56999
Target:  5'- aAGGGCgcccugcCGUGCCCGgGUGGCg-- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUgCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 89883 0.67 0.599862
Target:  5'- -cGGGCUUcgcCGCGCUCACGccGGCgGc -3'
miRNA:   3'- cuCCCGAAa--GCGCGGGUGCa-CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 27407 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 73186 0.67 0.609873
Target:  5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3'
miRNA:   3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 124721 0.67 0.609873
Target:  5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3'
miRNA:   3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 32198 0.67 0.56999
Target:  5'- cGGGGCc--CGagGCCCGCGggcggGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCg-CGGGUGCa----CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.