Results 101 - 120 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 5' | -60.9 | NC_001847.1 | + | 134847 | 0.67 | 0.577926 |
Target: 5'- cGGGGCgcggggacgGCGCCCGCGcgGGCuCGg -3' miRNA: 3'- cUCCCGaaag-----CGCGGGUGCa-CCG-GCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 34286 | 0.67 | 0.579914 |
Target: 5'- -uGGGCgc-CGCGCUCGC--GGCCGUc -3' miRNA: 3'- cuCCCGaaaGCGCGGGUGcaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 124721 | 0.67 | 0.609873 |
Target: 5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3' miRNA: 3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 73186 | 0.67 | 0.609873 |
Target: 5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3' miRNA: 3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 27407 | 0.67 | 0.609873 |
Target: 5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3' miRNA: 3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 30803 | 0.67 | 0.599862 |
Target: 5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3' miRNA: 3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 77255 | 0.67 | 0.599862 |
Target: 5'- cGGGGCggUUGCGCCC-CG-GGCguCGUc -3' miRNA: 3'- cUCCCGaaAGCGCGGGuGCaCCG--GCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 66665 | 0.67 | 0.599862 |
Target: 5'- -uGGcGCgcUUGCGCCCGCGcGGCgGg -3' miRNA: 3'- cuCC-CGaaAGCGCGGGUGCaCCGgCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 58618 | 0.67 | 0.599862 |
Target: 5'- --uGGCcagCGCGCCCGCGgggacguaGGCCGc -3' miRNA: 3'- cucCCGaaaGCGCGGGUGCa-------CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 82921 | 0.67 | 0.576933 |
Target: 5'- cGGGGGCUuuUUcucgcugucgaggcCGCGaCCCGCGgccaGGCCGc -3' miRNA: 3'- -CUCCCGA--AA--------------GCGC-GGGUGCa---CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 132553 | 0.67 | 0.579914 |
Target: 5'- -cGGGCUcgCGUGCggCCGCGgcGGCCGc -3' miRNA: 3'- cuCCCGAaaGCGCG--GGUGCa-CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 87469 | 0.67 | 0.579914 |
Target: 5'- --cGGCg--CGCGCCCGCuucguaaacuUGGCCGUg -3' miRNA: 3'- cucCCGaaaGCGCGGGUGc---------ACCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 128077 | 0.67 | 0.579914 |
Target: 5'- cGGGcGGCUcgccgCGUGCCUugGUGGCg-- -3' miRNA: 3'- -CUC-CCGAaa---GCGCGGGugCACCGgca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 28331 | 0.67 | 0.579914 |
Target: 5'- -cGGGCccggCGC-CCCGCGgGGCCGc -3' miRNA: 3'- cuCCCGaaa-GCGcGGGUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 31411 | 0.67 | 0.579914 |
Target: 5'- -cGGGCUUcccgGCGCCgGCGggcggcGGCCGg -3' miRNA: 3'- cuCCCGAAag--CGCGGgUGCa-----CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 52245 | 0.67 | 0.579914 |
Target: 5'- -cGGGCgc-CGCGCgCCGCGgcuUGGCUGc -3' miRNA: 3'- cuCCCGaaaGCGCG-GGUGC---ACCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 81594 | 0.67 | 0.559124 |
Target: 5'- -cGGGagcgUCGUugugcacgaggccGCCgGCGUGGCCGUa -3' miRNA: 3'- cuCCCgaa-AGCG-------------CGGgUGCACCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 60243 | 0.67 | 0.567022 |
Target: 5'- cGAGGGCUagcacggcgccgacUUCgcagGCGCUUGCGUGGUCa- -3' miRNA: 3'- -CUCCCGA--------------AAG----CGCGGGUGCACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 32509 | 0.67 | 0.56999 |
Target: 5'- aGGGGCUggcCGCGUaCACGcGGCUGUc -3' miRNA: 3'- cUCCCGAaa-GCGCGgGUGCaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 131764 | 0.67 | 0.569 |
Target: 5'- gGAGGGCUUUgCGCGgCUcggcgcgcggauuGCGgcGGCCGg -3' miRNA: 3'- -CUCCCGAAA-GCGCgGG-------------UGCa-CCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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