miRNA display CGI


Results 121 - 140 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 18220 0.67 0.567022
Target:  5'- -cGGGCUgugcggcucucggcgCGUGCUCGCGUGGCg-- -3'
miRNA:   3'- cuCCCGAaa-------------GCGCGGGUGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 27407 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 89883 0.67 0.599862
Target:  5'- -cGGGCUUcgcCGCGCUCACGccGGCgGc -3'
miRNA:   3'- cuCCCGAAa--GCGCGGGUGCa-CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 77255 0.67 0.599862
Target:  5'- cGGGGCggUUGCGCCC-CG-GGCguCGUc -3'
miRNA:   3'- cUCCCGaaAGCGCGGGuGCaCCG--GCA- -5'
6376 5' -60.9 NC_001847.1 + 2095 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 14529 0.66 0.619901
Target:  5'- cGGcGGCgcUCGCuGCCCGCGgugccGCCGUa -3'
miRNA:   3'- cUC-CCGaaAGCG-CGGGUGCac---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 127031 0.66 0.619901
Target:  5'- uGGGGCcc-CGCGCCUGCGcUGGCg-- -3'
miRNA:   3'- cUCCCGaaaGCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 28418 0.66 0.62793
Target:  5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3'
miRNA:   3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 44033 0.66 0.629938
Target:  5'- aGAGGGCUgcagCGagGCgCGCGUcggGGCCGc -3'
miRNA:   3'- -CUCCCGAaa--GCg-CGgGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 87595 0.66 0.629938
Target:  5'- -cGGGCUcccCGCGCCCGcCGUG-CUGg -3'
miRNA:   3'- cuCCCGAaa-GCGCGGGU-GCACcGGCa -5'
6376 5' -60.9 NC_001847.1 + 29569 0.66 0.629938
Target:  5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 96612 0.66 0.619901
Target:  5'- -cGGGUUUUccuugCGCGUgCGCGggGGCCGg -3'
miRNA:   3'- cuCCCGAAA-----GCGCGgGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 74368 0.66 0.660027
Target:  5'- -uGGGCUgcUGCGCCU-CGUGGCg-- -3'
miRNA:   3'- cuCCCGAaaGCGCGGGuGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 60385 0.66 0.660027
Target:  5'- aGGGGGCg--CGCGCcgaCCGCGUcucccaGCCGg -3'
miRNA:   3'- -CUCCCGaaaGCGCG---GGUGCAc-----CGGCa -5'
6376 5' -60.9 NC_001847.1 + 21397 0.66 0.679991
Target:  5'- gGAGGGgaUUCGgGCCgGCcgaggauucgGGCCGg -3'
miRNA:   3'- -CUCCCgaAAGCgCGGgUGca--------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 55914 0.66 0.650008
Target:  5'- cGGGGag--CGCGCCCGugaucCGcGGCCGg -3'
miRNA:   3'- cUCCCgaaaGCGCGGGU-----GCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98940 0.66 0.650008
Target:  5'- gGAGGGCg--CGCaGCCCcucguACGcGGCCu- -3'
miRNA:   3'- -CUCCCGaaaGCG-CGGG-----UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 8095 0.66 0.679991
Target:  5'- --cGGCgaggCGcCGaCCCACGUGGCCc- -3'
miRNA:   3'- cucCCGaaa-GC-GC-GGGUGCACCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.