miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 130867 0.69 0.464794
Target:  5'- --cGGCg--CGCGCCU-CGUGGCCGc -3'
miRNA:   3'- cucCCGaaaGCGCGGGuGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 42318 0.69 0.47397
Target:  5'- aGAGGGCgagugUUUcgugcuguggGCGCCCGUGUGGCgCGg -3'
miRNA:   3'- -CUCCCGa----AAG----------CGCGGGUGCACCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 56336 0.69 0.47397
Target:  5'- cGAGGGCUacuacaagCGCGacauggCCACG-GGCCGg -3'
miRNA:   3'- -CUCCCGAaa------GCGCg-----GGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 59904 0.69 0.47397
Target:  5'- gGAGGGCggcgCGCGCgCGCGgcgaGaGCCGg -3'
miRNA:   3'- -CUCCCGaaa-GCGCGgGUGCa---C-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 89757 0.69 0.479519
Target:  5'- -cGGGCUgcggcacgugcaCGCGCCgGCGUacgaGGCCGUc -3'
miRNA:   3'- cuCCCGAaa----------GCGCGGgUGCA----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 98876 0.69 0.483236
Target:  5'- aAGGGCgcgUGCGCCUggGCGgcccaGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCGCGGG--UGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 21872 0.69 0.483236
Target:  5'- cGGGGGCUgcggCGCGCUgcCGaGGCCGa -3'
miRNA:   3'- -CUCCCGAaa--GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 125079 0.69 0.483236
Target:  5'- cGGGGCgc-UGgGCCCGCGcGGCCa- -3'
miRNA:   3'- cUCCCGaaaGCgCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 38225 0.69 0.483236
Target:  5'- -cGGGCcg-CGCGCCUcuACGcGGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 27803 0.69 0.491649
Target:  5'- -cGGGCUcuggccaUUCGCGCCCcggcgcacGCGcGGCUGa -3'
miRNA:   3'- cuCCCGA-------AAGCGCGGG--------UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 72974 0.69 0.491649
Target:  5'- uGGGGaCgcggaCGCGCCCGCGcgggagcUGGCCGc -3'
miRNA:   3'- cUCCC-Gaaa--GCGCGGGUGC-------ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 133887 0.69 0.492588
Target:  5'- uGGGGGCUcggCGCGCCgcUGcGGCCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 31074 0.69 0.492588
Target:  5'- uGGGGGCUcggCGCGCCgcUGcGGCCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 79520 0.69 0.492588
Target:  5'- cGGGGCUggcggcgUCGuCGCCguCGgGGCCGg -3'
miRNA:   3'- cUCCCGAa------AGC-GCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 102607 0.68 0.499183
Target:  5'- cGAGGGCUgcgCGCGCaucgccuccgacagCCGCGUguacgcGGCCa- -3'
miRNA:   3'- -CUCCCGAaa-GCGCG--------------GGUGCA------CCGGca -5'
6376 5' -60.9 NC_001847.1 + 70676 0.68 0.500129
Target:  5'- uGGGGCUggaggggaccgCGgGCCCGgGgcUGGCCGUg -3'
miRNA:   3'- cUCCCGAaa---------GCgCGGGUgC--ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 80003 0.68 0.502022
Target:  5'- gGGGGGCUcuaCGCGCgCGCGUuuGGCgCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGgGUGCA--CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 91731 0.68 0.502022
Target:  5'- cGAGGcccaGCUgcaGCGCCCugcgcGCGUcGGCCGUg -3'
miRNA:   3'- -CUCC----CGAaagCGCGGG-----UGCA-CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 46531 0.68 0.508673
Target:  5'- gGGGGGCggcggcggCGCGCgcgagguccuccagCCGCGcGGCCGUu -3'
miRNA:   3'- -CUCCCGaaa-----GCGCG--------------GGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 30260 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.