miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 2561 0.68 0.550277
Target:  5'- -cGGGCUgUCuucggcgcggGCGCCUGCGcGGCCGc -3'
miRNA:   3'- cuCCCGAaAG----------CGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 40871 0.68 0.550277
Target:  5'- -cGGGC----GCGCCCaaugcGCGUGGUCGUa -3'
miRNA:   3'- cuCCCGaaagCGCGGG-----UGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 128032 0.68 0.550277
Target:  5'- gGAGGaGCccggccgUgGCGCCUACGUGGUCu- -3'
miRNA:   3'- -CUCC-CGaa-----AgCGCGGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 1966 0.68 0.550277
Target:  5'- cGAGGGCagccCGCGCCCGCGcaGGUa-- -3'
miRNA:   3'- -CUCCCGaaa-GCGCGGGUGCa-CCGgca -5'
6376 5' -60.9 NC_001847.1 + 54557 0.68 0.550277
Target:  5'- cGGGGGCgg-CGCGgaggacgacggcCCCGCG-GGCUGg -3'
miRNA:   3'- -CUCCCGaaaGCGC------------GGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 81594 0.67 0.559124
Target:  5'- -cGGGagcgUCGUugugcacgaggccGCCgGCGUGGCCGUa -3'
miRNA:   3'- cuCCCgaa-AGCG-------------CGGgUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 60243 0.67 0.567022
Target:  5'- cGAGGGCUagcacggcgccgacUUCgcagGCGCUUGCGUGGUCa- -3'
miRNA:   3'- -CUCCCGA--------------AAG----CGCGGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 18220 0.67 0.567022
Target:  5'- -cGGGCUgugcggcucucggcgCGUGCUCGCGUGGCg-- -3'
miRNA:   3'- cuCCCGAaa-------------GCGCGGGUGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 131764 0.67 0.569
Target:  5'- gGAGGGCUUUgCGCGgCUcggcgcgcggauuGCGgcGGCCGg -3'
miRNA:   3'- -CUCCCGAAA-GCGCgGG-------------UGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 135011 0.67 0.56999
Target:  5'- cGGGGCc--CGagGCCCGCGggcggGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCg-CGGGUGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 117336 0.67 0.56999
Target:  5'- gGGGGGCggccUCGCcCCC-CGcGGCCGa -3'
miRNA:   3'- -CUCCCGaa--AGCGcGGGuGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32198 0.67 0.56999
Target:  5'- cGGGGCc--CGagGCCCGCGggcggGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCg-CGGGUGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 76868 0.67 0.56999
Target:  5'- aAGGGCgcccugcCGUGCCCGgGUGGCg-- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUgCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 60981 0.67 0.56999
Target:  5'- ---cGCUgcgCGCGCCCACG-GcGCCGUc -3'
miRNA:   3'- cuccCGAaa-GCGCGGGUGCaC-CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 69383 0.67 0.56999
Target:  5'- -cGGcGCgcagcUUGCGCCCGCG-GGCCa- -3'
miRNA:   3'- cuCC-CGaa---AGCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 36839 0.67 0.56999
Target:  5'- uGGGGGCUggcggacgUGCGCUCGgCGgcGGCCGa -3'
miRNA:   3'- -CUCCCGAaa------GCGCGGGU-GCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 48156 0.67 0.56999
Target:  5'- -cGGGCcggcgCGCGCCgGCccGGCCGg -3'
miRNA:   3'- cuCCCGaaa--GCGCGGgUGcaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 86742 0.67 0.56999
Target:  5'- gGAGGGCgaugugUCGCGCUgGCGUGa-CGUu -3'
miRNA:   3'- -CUCCCGaa----AGCGCGGgUGCACcgGCA- -5'
6376 5' -60.9 NC_001847.1 + 32509 0.67 0.56999
Target:  5'- aGGGGCUggcCGCGUaCACGcGGCUGUc -3'
miRNA:   3'- cUCCCGAaa-GCGCGgGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 82921 0.67 0.576933
Target:  5'- cGGGGGCUuuUUcucgcugucgaggcCGCGaCCCGCGgccaGGCCGc -3'
miRNA:   3'- -CUCCCGA--AA--------------GCGC-GGGUGCa---CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.