Results 121 - 140 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 5' | -60.9 | NC_001847.1 | + | 89883 | 0.67 | 0.599862 |
Target: 5'- -cGGGCUUcgcCGCGCUCACGccGGCgGc -3' miRNA: 3'- cuCCCGAAa--GCGCGGGUGCa-CCGgCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 27407 | 0.67 | 0.609873 |
Target: 5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3' miRNA: 3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 73186 | 0.67 | 0.609873 |
Target: 5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3' miRNA: 3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 124721 | 0.67 | 0.609873 |
Target: 5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3' miRNA: 3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 130220 | 0.67 | 0.609873 |
Target: 5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3' miRNA: 3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 47872 | 0.66 | 0.616892 |
Target: 5'- -cGGGCgcgcgcagcgcgcgCGCGCCCGCGc-GCCGg -3' miRNA: 3'- cuCCCGaaa-----------GCGCGGGUGCacCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 14529 | 0.66 | 0.619901 |
Target: 5'- cGGcGGCgcUCGCuGCCCGCGgugccGCCGUa -3' miRNA: 3'- cUC-CCGaaAGCG-CGGGUGCac---CGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 14142 | 0.66 | 0.619901 |
Target: 5'- cGGGGCc--CGCGCCUggGcGGCCGc -3' miRNA: 3'- cUCCCGaaaGCGCGGGugCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 127031 | 0.66 | 0.619901 |
Target: 5'- uGGGGCcc-CGCGCCUGCGcUGGCg-- -3' miRNA: 3'- cUCCCGaaaGCGCGGGUGC-ACCGgca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 96612 | 0.66 | 0.619901 |
Target: 5'- -cGGGUUUUccuugCGCGUgCGCGggGGCCGg -3' miRNA: 3'- cuCCCGAAA-----GCGCGgGUGCa-CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 131231 | 0.66 | 0.62793 |
Target: 5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3' miRNA: 3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 28418 | 0.66 | 0.62793 |
Target: 5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3' miRNA: 3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 59347 | 0.66 | 0.629938 |
Target: 5'- cGGcGGCgaggUCGCGCgCCGCGccgagcccgcGGCCGUg -3' miRNA: 3'- cUC-CCGaa--AGCGCG-GGUGCa---------CCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 87595 | 0.66 | 0.629938 |
Target: 5'- -cGGGCUcccCGCGCCCGcCGUG-CUGg -3' miRNA: 3'- cuCCCGAaa-GCGCGGGU-GCACcGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 54601 | 0.66 | 0.629938 |
Target: 5'- uGGcGGCg--CGCGCCCgcgccgaugccgACGUGcGCCGa -3' miRNA: 3'- cUC-CCGaaaGCGCGGG------------UGCAC-CGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 29569 | 0.66 | 0.629938 |
Target: 5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3' miRNA: 3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 132382 | 0.66 | 0.629938 |
Target: 5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3' miRNA: 3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 44033 | 0.66 | 0.629938 |
Target: 5'- aGAGGGCUgcagCGagGCgCGCGUcggGGCCGc -3' miRNA: 3'- -CUCCCGAaa--GCg-CGgGUGCA---CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 35123 | 0.66 | 0.634957 |
Target: 5'- gGAGGGCgaccuggcggcCGUGCCUcggcucgccaaguACGUGGCCu- -3' miRNA: 3'- -CUCCCGaaa--------GCGCGGG-------------UGCACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 116712 | 0.66 | 0.639976 |
Target: 5'- --cGGCUggcCGCGgCgCACGUGGCCa- -3' miRNA: 3'- cucCCGAaa-GCGCgG-GUGCACCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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