miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 31074 0.69 0.492588
Target:  5'- uGGGGGCUcggCGCGCCgcUGcGGCCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 31411 0.67 0.579914
Target:  5'- -cGGGCUUcccgGCGCCgGCGggcggcGGCCGg -3'
miRNA:   3'- cuCCCGAAag--CGCGGgUGCa-----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32034 0.67 0.577926
Target:  5'- cGGGGCgcggggacgGCGCCCGCGcgGGCuCGg -3'
miRNA:   3'- cUCCCGaaag-----CGCGGGUGCa-CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 32140 0.68 0.521121
Target:  5'- -uGGGCgccgcCGCGCCCGCGcacGCCGc -3'
miRNA:   3'- cuCCCGaaa--GCGCGGGUGCac-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 32198 0.67 0.56999
Target:  5'- cGGGGCc--CGagGCCCGCGggcggGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCg-CGGGUGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32273 0.68 0.511535
Target:  5'- -cGuGGCUcgCGcCGUCCGCGUGGCgCGg -3'
miRNA:   3'- cuC-CCGAaaGC-GCGGGUGCACCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 32509 0.67 0.56999
Target:  5'- aGGGGCUggcCGCGUaCACGcGGCUGUc -3'
miRNA:   3'- cUCCCGAaa-GCGCGgGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 32826 0.7 0.394988
Target:  5'- cGAGcGCg--CGagGCCCGCGUGGCCGc -3'
miRNA:   3'- -CUCcCGaaaGCg-CGGGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 33649 0.73 0.297025
Target:  5'- cGA-GGCg--CGCGCgCGCGUGGCCGc -3'
miRNA:   3'- -CUcCCGaaaGCGCGgGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 33882 0.66 0.639976
Target:  5'- aGGaGGCg--C-CGCCgCGCGUGGCCGc -3'
miRNA:   3'- cUC-CCGaaaGcGCGG-GUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 34286 0.67 0.579914
Target:  5'- -uGGGCgc-CGCGCUCGC--GGCCGUc -3'
miRNA:   3'- cuCCCGaaaGCGCGGGUGcaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 35123 0.66 0.634957
Target:  5'- gGAGGGCgaccuggcggcCGUGCCUcggcucgccaaguACGUGGCCu- -3'
miRNA:   3'- -CUCCCGaaa--------GCGCGGG-------------UGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 36210 0.66 0.679991
Target:  5'- aGGGGCUg-CGCGCCCuCcUGGCgGc -3'
miRNA:   3'- cUCCCGAaaGCGCGGGuGcACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 36839 0.67 0.56999
Target:  5'- uGGGGGCUggcggacgUGCGCUCGgCGgcGGCCGa -3'
miRNA:   3'- -CUCCCGAaa------GCGCGGGU-GCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 37773 0.66 0.639976
Target:  5'- gGAGGGC--UCGCGCCugauCAUGUgccugcGGCUGUu -3'
miRNA:   3'- -CUCCCGaaAGCGCGG----GUGCA------CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 38225 0.69 0.483236
Target:  5'- -cGGGCcg-CGCGCCUcuACGcGGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 38504 0.67 0.579914
Target:  5'- gGGGGGCgg-CGCggucGCCgGCGcugugcucUGGCCGUa -3'
miRNA:   3'- -CUCCCGaaaGCG----CGGgUGC--------ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 39626 0.68 0.530777
Target:  5'- aGGGGCaagccuggCGCGCCCGCcaGGCCc- -3'
miRNA:   3'- cUCCCGaaa-----GCGCGGGUGcaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 40871 0.68 0.550277
Target:  5'- -cGGGC----GCGCCCaaugcGCGUGGUCGUa -3'
miRNA:   3'- cuCCCGaaagCGCGGG-----UGCACCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.