miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 42318 0.69 0.47397
Target:  5'- aGAGGGCgagugUUUcgugcuguggGCGCCCGUGUGGCgCGg -3'
miRNA:   3'- -CUCCCGa----AAG----------CGCGGGUGCACCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 42742 0.7 0.394988
Target:  5'- -cGGGCUg--GCGCCCcccuGgGUGGCCGa -3'
miRNA:   3'- cuCCCGAaagCGCGGG----UgCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 43580 0.72 0.317846
Target:  5'- -cGGGCgacgCGCGCCCcaGCGUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-GCGCGGG--UGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 44033 0.66 0.629938
Target:  5'- aGAGGGCUgcagCGagGCgCGCGUcggGGCCGc -3'
miRNA:   3'- -CUCCCGAaa--GCg-CGgGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 44247 0.68 0.550277
Target:  5'- uGGGGCUgagCGCGCCgGCGacugGGCa-- -3'
miRNA:   3'- cUCCCGAaa-GCGCGGgUGCa---CCGgca -5'
6376 5' -60.9 NC_001847.1 + 46481 0.66 0.679991
Target:  5'- cAGGGCcUUCcaCGUCgcaGCGUGGCCGa -3'
miRNA:   3'- cUCCCGaAAGc-GCGGg--UGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 46531 0.68 0.508673
Target:  5'- gGGGGGCggcggcggCGCGCgcgagguccuccagCCGCGcGGCCGUu -3'
miRNA:   3'- -CUCCCGaaa-----GCGCG--------------GGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 46918 0.71 0.370613
Target:  5'- gGGGGGCgcgUCGgGCCCGgGcuccgGGCCGc -3'
miRNA:   3'- -CUCCCGaa-AGCgCGGGUgCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 47687 0.7 0.403341
Target:  5'- -cGGGCg--CGCG-CCGCGgGGCCGUu -3'
miRNA:   3'- cuCCCGaaaGCGCgGGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 47872 0.66 0.616892
Target:  5'- -cGGGCgcgcgcagcgcgcgCGCGCCCGCGc-GCCGg -3'
miRNA:   3'- cuCCCGaaa-----------GCGCGGGUGCacCGGCa -5'
6376 5' -60.9 NC_001847.1 + 48156 0.67 0.56999
Target:  5'- -cGGGCcggcgCGCGCCgGCccGGCCGg -3'
miRNA:   3'- cuCCCGaaa--GCGCGGgUGcaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 50670 0.73 0.270933
Target:  5'- gGAGGGCga-CGUGCCCuGCG-GGCUGUg -3'
miRNA:   3'- -CUCCCGaaaGCGCGGG-UGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 51377 0.73 0.277278
Target:  5'- cGAGGGCUgccUCGCcgguguCCCACGUGGCg-- -3'
miRNA:   3'- -CUCCCGAa--AGCGc-----GGGUGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 52044 0.75 0.218999
Target:  5'- aGGGGCUcauuaUCGCGCCCGaaggcCGUGGCUGc -3'
miRNA:   3'- cUCCCGAa----AGCGCGGGU-----GCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 52245 0.67 0.579914
Target:  5'- -cGGGCgc-CGCGCgCCGCGgcuUGGCUGc -3'
miRNA:   3'- cuCCCGaaaGCGCG-GGUGC---ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 52920 0.69 0.446726
Target:  5'- cAGcGGCUcgggGCGCCCGCGaaGGCCGUg -3'
miRNA:   3'- cUC-CCGAaag-CGCGGGUGCa-CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 52977 0.68 0.550277
Target:  5'- cGAGGGCcgcgUCGCGCa---GUGGCCc- -3'
miRNA:   3'- -CUCCCGaa--AGCGCGggugCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 54557 0.68 0.550277
Target:  5'- cGGGGGCgg-CGCGgaggacgacggcCCCGCG-GGCUGg -3'
miRNA:   3'- -CUCCCGaaaGCGC------------GGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 54601 0.66 0.629938
Target:  5'- uGGcGGCg--CGCGCCCgcgccgaugccgACGUGcGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCGCGGG------------UGCAC-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 55750 0.76 0.171508
Target:  5'- --cGGC--UCGCGCCCGCGcGGCCGUg -3'
miRNA:   3'- cucCCGaaAGCGCGGGUGCaCCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.