miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 55914 0.66 0.650008
Target:  5'- cGGGGag--CGCGCCCGugaucCGcGGCCGg -3'
miRNA:   3'- cUCCCgaaaGCGCGGGU-----GCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 56082 0.66 0.660027
Target:  5'- --cGGCUgagCGCGCCCGgGgugcggGGCUGg -3'
miRNA:   3'- cucCCGAaa-GCGCGGGUgCa-----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 56336 0.69 0.47397
Target:  5'- cGAGGGCUacuacaagCGCGacauggCCACG-GGCCGg -3'
miRNA:   3'- -CUCCCGAaa------GCGCg-----GGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 56797 0.66 0.679991
Target:  5'- ---cGUUcgUCGCGCUCACGgGGCCGg -3'
miRNA:   3'- cuccCGAa-AGCGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 57771 0.66 0.669025
Target:  5'- cGGGGCUgcugGUGCUCGCcgggcugGUGGCCGc -3'
miRNA:   3'- cUCCCGAaag-CGCGGGUG-------CACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 58618 0.67 0.599862
Target:  5'- --uGGCcagCGCGCCCGCGgggacguaGGCCGc -3'
miRNA:   3'- cucCCGaaaGCGCGGGUGCa-------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 59316 0.66 0.650008
Target:  5'- cAGGGCgcg-GCGCCgGCG-GcGCCGUa -3'
miRNA:   3'- cUCCCGaaagCGCGGgUGCaC-CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 59347 0.66 0.629938
Target:  5'- cGGcGGCgaggUCGCGCgCCGCGccgagcccgcGGCCGUg -3'
miRNA:   3'- cUC-CCGaa--AGCGCG-GGUGCa---------CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 59904 0.69 0.47397
Target:  5'- gGAGGGCggcgCGCGCgCGCGgcgaGaGCCGg -3'
miRNA:   3'- -CUCCCGaaa-GCGCGgGUGCa---C-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 60243 0.67 0.567022
Target:  5'- cGAGGGCUagcacggcgccgacUUCgcagGCGCUUGCGUGGUCa- -3'
miRNA:   3'- -CUCCCGA--------------AAG----CGCGGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 60385 0.66 0.660027
Target:  5'- aGGGGGCg--CGCGCcgaCCGCGUcucccaGCCGg -3'
miRNA:   3'- -CUCCCGaaaGCGCG---GGUGCAc-----CGGCa -5'
6376 5' -60.9 NC_001847.1 + 60981 0.67 0.56999
Target:  5'- ---cGCUgcgCGCGCCCACG-GcGCCGUc -3'
miRNA:   3'- cuccCGAaa-GCGCGGGUGCaC-CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 61943 0.7 0.420376
Target:  5'- cAGcGGCgg-CGCgGCCCGCGcgGGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCG-CGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 65332 0.7 0.403341
Target:  5'- aGAGGGCgucaaagGCGgCCGCGUacaGGCCGUu -3'
miRNA:   3'- -CUCCCGaaag---CGCgGGUGCA---CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 66665 0.67 0.599862
Target:  5'- -uGGcGCgcUUGCGCCCGCGcGGCgGg -3'
miRNA:   3'- cuCC-CGaaAGCGCGGGUGCaCCGgCa -5'
6376 5' -60.9 NC_001847.1 + 69383 0.67 0.56999
Target:  5'- -cGGcGCgcagcUUGCGCCCGCG-GGCCa- -3'
miRNA:   3'- cuCC-CGaa---AGCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 69551 0.74 0.252597
Target:  5'- -cGGGCguggaugCGCGUgugccuggggggCCACGUGGCCGUg -3'
miRNA:   3'- cuCCCGaaa----GCGCG------------GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 70373 0.67 0.589873
Target:  5'- aGGGGGCgccggggCGCgaGCUCGCGcUGGCCa- -3'
miRNA:   3'- -CUCCCGaaa----GCG--CGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 70532 0.7 0.420376
Target:  5'- -uGGGCgg-CGUGCUgGCGcUGGCCGa -3'
miRNA:   3'- cuCCCGaaaGCGCGGgUGC-ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 70676 0.68 0.500129
Target:  5'- uGGGGCUggaggggaccgCGgGCCCGgGgcUGGCCGUg -3'
miRNA:   3'- cUCCCGAaa---------GCgCGGGUgC--ACCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.