miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 125079 0.69 0.483236
Target:  5'- cGGGGCgc-UGgGCCCGCGcGGCCa- -3'
miRNA:   3'- cUCCCGaaaGCgCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 124924 0.68 0.511535
Target:  5'- cGGGGGCgacagcgggCGCGCCCugGgcccGGCgGc -3'
miRNA:   3'- -CUCCCGaaa------GCGCGGGugCa---CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 124721 0.67 0.609873
Target:  5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3'
miRNA:   3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 124210 0.66 0.679991
Target:  5'- gGAGGGgaUUCGgGCCgGCcgaggauucgGGCCGg -3'
miRNA:   3'- -CUCCCgaAAGCgCGGgUGca--------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 122823 0.66 0.639976
Target:  5'- cGAGccGGCgggCGCGCCCAcCG-GGCCc- -3'
miRNA:   3'- -CUC--CCGaaaGCGCGGGU-GCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 121756 0.68 0.521121
Target:  5'- -cGGGCccgcggCGCGCCCggACGUGcgcGCCGUu -3'
miRNA:   3'- cuCCCGaaa---GCGCGGG--UGCAC---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 120925 0.66 0.670024
Target:  5'- cGAGGGCggggcgggCGCGCggGCGUGGUgGc -3'
miRNA:   3'- -CUCCCGaaa-----GCGCGggUGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 117336 0.67 0.56999
Target:  5'- gGGGGGCggccUCGCcCCC-CGcGGCCGa -3'
miRNA:   3'- -CUCCCGaa--AGCGcGGGuGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 116712 0.66 0.639976
Target:  5'- --cGGCUggcCGCGgCgCACGUGGCCa- -3'
miRNA:   3'- cucCCGAaa-GCGCgG-GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 116173 0.69 0.455712
Target:  5'- -cGGGCgc-CGCGgCCGCGcUGGUCGUc -3'
miRNA:   3'- cuCCCGaaaGCGCgGGUGC-ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 113620 0.66 0.679991
Target:  5'- -uGGGCg--CGUugGCCCGCGcGGCCc- -3'
miRNA:   3'- cuCCCGaaaGCG--CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 113491 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 111364 0.68 0.549296
Target:  5'- -uGGGCgaccUCGCGCCCGgGcauccgcUGGCCa- -3'
miRNA:   3'- cuCCCGaa--AGCGCGGGUgC-------ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 110908 0.66 0.679991
Target:  5'- --cGGCgaggCGcCGaCCCACGUGGCCc- -3'
miRNA:   3'- cucCCGaaa-GC-GC-GGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 109968 0.66 0.670024
Target:  5'- -cGGGCgugUCGCGCUCGCucgcccgGGCgGUu -3'
miRNA:   3'- cuCCCGaa-AGCGCGGGUGca-----CCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 108540 0.71 0.386749
Target:  5'- gGAGGGCUUaCcUGCCCGCGgGGCgGUu -3'
miRNA:   3'- -CUCCCGAAaGcGCGGGUGCaCCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 108525 1.06 0.00131
Target:  5'- cGAGGGCUUUCGCGCCCACGUGGCCGUc -3'
miRNA:   3'- -CUCCCGAAAGCGCGGGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 106730 0.7 0.411804
Target:  5'- -cGGGCgccgguugCGCGCCCGCGcUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-----GCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 105350 0.7 0.403341
Target:  5'- cGGGGCgcUCGCGUCCACaaacGGCCa- -3'
miRNA:   3'- cUCCCGaaAGCGCGGGUGca--CCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.