miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 104908 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 103342 0.66 0.679991
Target:  5'- gGAGGGCaa--GUGCCCgacgcggggaACGUGGCgGc -3'
miRNA:   3'- -CUCCCGaaagCGCGGG----------UGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 103170 0.71 0.354943
Target:  5'- cGAGGGCg---GCGUCCACGgGGCCc- -3'
miRNA:   3'- -CUCCCGaaagCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 103167 0.72 0.339746
Target:  5'- -cGGGC-UUCGCGCCC-CGgGGCCc- -3'
miRNA:   3'- cuCCCGaAAGCGCGGGuGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 103116 0.69 0.446726
Target:  5'- cGGGGGCUUcccCGCGCgaGCGcgGGCCGc -3'
miRNA:   3'- -CUCCCGAAa--GCGCGggUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 102801 0.68 0.537575
Target:  5'- cGGGGGCUgggcccccuccgcgcCGCGCCgCGCG-GGCCc- -3'
miRNA:   3'- -CUCCCGAaa-------------GCGCGG-GUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 102607 0.68 0.499183
Target:  5'- cGAGGGCUgcgCGCGCaucgccuccgacagCCGCGUguacgcGGCCa- -3'
miRNA:   3'- -CUCCCGAaa-GCGCG--------------GGUGCA------CCGGca -5'
6376 5' -60.9 NC_001847.1 + 101357 0.66 0.669025
Target:  5'- cGGGGCUgcaugCGCGCgcuugcgCCGCGggGGCUGc -3'
miRNA:   3'- cUCCCGAaa---GCGCG-------GGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98940 0.66 0.650008
Target:  5'- gGAGGGCg--CGCaGCCCcucguACGcGGCCu- -3'
miRNA:   3'- -CUCCCGaaaGCG-CGGG-----UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 98876 0.69 0.483236
Target:  5'- aAGGGCgcgUGCGCCUggGCGgcccaGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCGCGGG--UGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98170 0.7 0.420376
Target:  5'- -cGGGCccgcUCgccgGCGCCCGCGcUGGCCGc -3'
miRNA:   3'- cuCCCGaa--AG----CGCGGGUGC-ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 97322 0.7 0.403341
Target:  5'- cAGGcGCgucggcgUCGCGCCCGCccGGCCGc -3'
miRNA:   3'- cUCC-CGaa-----AGCGCGGGUGcaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 96612 0.66 0.619901
Target:  5'- -cGGGUUUUccuugCGCGUgCGCGggGGCCGg -3'
miRNA:   3'- cuCCCGAAA-----GCGCGgGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 94744 0.71 0.370613
Target:  5'- -cGGGCUUugggCGCGUCUugGccggGGCCGUc -3'
miRNA:   3'- cuCCCGAAa---GCGCGGGugCa---CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 93791 0.66 0.670024
Target:  5'- --uGGCUgguuccgCGCGgCCGCGcGGCCGa -3'
miRNA:   3'- cucCCGAaa-----GCGCgGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 92006 0.72 0.339746
Target:  5'- -cGGGCgca-GCGCCCGCG-GGCCc- -3'
miRNA:   3'- cuCCCGaaagCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 91731 0.68 0.502022
Target:  5'- cGAGGcccaGCUgcaGCGCCCugcgcGCGUcGGCCGUg -3'
miRNA:   3'- -CUCC----CGAaagCGCGGG-----UGCA-CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 89883 0.67 0.599862
Target:  5'- -cGGGCUUcgcCGCGCUCACGccGGCgGc -3'
miRNA:   3'- cuCCCGAAa--GCGCGGGUGCa-CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 89757 0.69 0.479519
Target:  5'- -cGGGCUgcggcacgugcaCGCGCCgGCGUacgaGGCCGUc -3'
miRNA:   3'- cuCCCGAaa----------GCGCGGgUGCA----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 87619 0.66 0.650008
Target:  5'- cGGcGGCUUUgGCGCCCGgGcUGcGCUGg -3'
miRNA:   3'- cUC-CCGAAAgCGCGGGUgC-AC-CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.