miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 87595 0.66 0.629938
Target:  5'- -cGGGCUcccCGCGCCCGcCGUG-CUGg -3'
miRNA:   3'- cuCCCGAaa-GCGCGGGU-GCACcGGCa -5'
6376 5' -60.9 NC_001847.1 + 87469 0.67 0.579914
Target:  5'- --cGGCg--CGCGCCCGCuucguaaacuUGGCCGUg -3'
miRNA:   3'- cucCCGaaaGCGCGGGUGc---------ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 87356 0.66 0.679991
Target:  5'- cGAGGGCcuggccgaGCaCCCGgcCGUGGCCGc -3'
miRNA:   3'- -CUCCCGaaag----CGcGGGU--GCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 86742 0.67 0.56999
Target:  5'- gGAGGGCgaugugUCGCGCUgGCGUGa-CGUu -3'
miRNA:   3'- -CUCCCGaa----AGCGCGGgUGCACcgGCA- -5'
6376 5' -60.9 NC_001847.1 + 86521 0.66 0.660027
Target:  5'- cGGcGGCUgg-GCGCCCGCGUG-CUGg -3'
miRNA:   3'- cUC-CCGAaagCGCGGGUGCACcGGCa -5'
6376 5' -60.9 NC_001847.1 + 84681 0.69 0.464794
Target:  5'- ---uGCUgUCGCGCggcgcUCACGUGGCCGUa -3'
miRNA:   3'- cuccCGAaAGCGCG-----GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 82921 0.67 0.576933
Target:  5'- cGGGGGCUuuUUcucgcugucgaggcCGCGaCCCGCGgccaGGCCGc -3'
miRNA:   3'- -CUCCCGA--AA--------------GCGC-GGGUGCa---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 81594 0.67 0.559124
Target:  5'- -cGGGagcgUCGUugugcacgaggccGCCgGCGUGGCCGUa -3'
miRNA:   3'- cuCCCgaa-AGCG-------------CGGgUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 80552 0.7 0.432557
Target:  5'- -cGGGCgcgCGCcgccagcgccgcccaGCCCGCGgGGCCGUc -3'
miRNA:   3'- cuCCCGaaaGCG---------------CGGGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 80003 0.68 0.502022
Target:  5'- gGGGGGCUcuaCGCGCgCGCGUuuGGCgCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGgGUGCA--CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 79520 0.69 0.492588
Target:  5'- cGGGGCUggcggcgUCGuCGCCguCGgGGCCGg -3'
miRNA:   3'- cUCCCGAa------AGC-GCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 77467 0.66 0.664029
Target:  5'- uGGGGCgggCGCcgggcgcccggcccgGCCCGCcggcccgagucgGUGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCG---------------CGGGUG------------CACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 77255 0.67 0.599862
Target:  5'- cGGGGCggUUGCGCCC-CG-GGCguCGUc -3'
miRNA:   3'- cUCCCGaaAGCGCGGGuGCaCCG--GCA- -5'
6376 5' -60.9 NC_001847.1 + 76902 0.7 0.43784
Target:  5'- gGAGGGCggUCGCGCgCCGCcgcuGCCGc -3'
miRNA:   3'- -CUCCCGaaAGCGCG-GGUGcac-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 76868 0.67 0.56999
Target:  5'- aAGGGCgcccugcCGUGCCCGgGUGGCg-- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUgCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 74368 0.66 0.660027
Target:  5'- -uGGGCUgcUGCGCCU-CGUGGCg-- -3'
miRNA:   3'- cuCCCGAaaGCGCGGGuGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 74270 0.71 0.386749
Target:  5'- uGGGGCccgcgcgCGCGCUCGCGcUGGCCu- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 73235 0.66 0.645996
Target:  5'- gGGGGGCggcggcgcgggCGCGCUCGa--GGCCGUg -3'
miRNA:   3'- -CUCCCGaaa--------GCGCGGGUgcaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 73186 0.67 0.609873
Target:  5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3'
miRNA:   3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 72974 0.69 0.491649
Target:  5'- uGGGGaCgcggaCGCGCCCGCGcgggagcUGGCCGc -3'
miRNA:   3'- cUCCC-Gaaa--GCGCGGGUGC-------ACCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.