Results 101 - 120 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 5' | -60.9 | NC_001847.1 | + | 55914 | 0.66 | 0.650008 |
Target: 5'- cGGGGag--CGCGCCCGugaucCGcGGCCGg -3' miRNA: 3'- cUCCCgaaaGCGCGGGU-----GCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 55750 | 0.76 | 0.171508 |
Target: 5'- --cGGC--UCGCGCCCGCGcGGCCGUg -3' miRNA: 3'- cucCCGaaAGCGCGGGUGCaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 54601 | 0.66 | 0.629938 |
Target: 5'- uGGcGGCg--CGCGCCCgcgccgaugccgACGUGcGCCGa -3' miRNA: 3'- cUC-CCGaaaGCGCGGG------------UGCAC-CGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 54557 | 0.68 | 0.550277 |
Target: 5'- cGGGGGCgg-CGCGgaggacgacggcCCCGCG-GGCUGg -3' miRNA: 3'- -CUCCCGaaaGCGC------------GGGUGCaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 52977 | 0.68 | 0.550277 |
Target: 5'- cGAGGGCcgcgUCGCGCa---GUGGCCc- -3' miRNA: 3'- -CUCCCGaa--AGCGCGggugCACCGGca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 52920 | 0.69 | 0.446726 |
Target: 5'- cAGcGGCUcgggGCGCCCGCGaaGGCCGUg -3' miRNA: 3'- cUC-CCGAaag-CGCGGGUGCa-CCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 52245 | 0.67 | 0.579914 |
Target: 5'- -cGGGCgc-CGCGCgCCGCGgcuUGGCUGc -3' miRNA: 3'- cuCCCGaaaGCGCG-GGUGC---ACCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 52044 | 0.75 | 0.218999 |
Target: 5'- aGGGGCUcauuaUCGCGCCCGaaggcCGUGGCUGc -3' miRNA: 3'- cUCCCGAa----AGCGCGGGU-----GCACCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 51377 | 0.73 | 0.277278 |
Target: 5'- cGAGGGCUgccUCGCcgguguCCCACGUGGCg-- -3' miRNA: 3'- -CUCCCGAa--AGCGc-----GGGUGCACCGgca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 50670 | 0.73 | 0.270933 |
Target: 5'- gGAGGGCga-CGUGCCCuGCG-GGCUGUg -3' miRNA: 3'- -CUCCCGaaaGCGCGGG-UGCaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 48156 | 0.67 | 0.56999 |
Target: 5'- -cGGGCcggcgCGCGCCgGCccGGCCGg -3' miRNA: 3'- cuCCCGaaa--GCGCGGgUGcaCCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 47872 | 0.66 | 0.616892 |
Target: 5'- -cGGGCgcgcgcagcgcgcgCGCGCCCGCGc-GCCGg -3' miRNA: 3'- cuCCCGaaa-----------GCGCGGGUGCacCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 47687 | 0.7 | 0.403341 |
Target: 5'- -cGGGCg--CGCG-CCGCGgGGCCGUu -3' miRNA: 3'- cuCCCGaaaGCGCgGGUGCaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 46918 | 0.71 | 0.370613 |
Target: 5'- gGGGGGCgcgUCGgGCCCGgGcuccgGGCCGc -3' miRNA: 3'- -CUCCCGaa-AGCgCGGGUgCa----CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 46531 | 0.68 | 0.508673 |
Target: 5'- gGGGGGCggcggcggCGCGCgcgagguccuccagCCGCGcGGCCGUu -3' miRNA: 3'- -CUCCCGaaa-----GCGCG--------------GGUGCaCCGGCA- -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 46481 | 0.66 | 0.679991 |
Target: 5'- cAGGGCcUUCcaCGUCgcaGCGUGGCCGa -3' miRNA: 3'- cUCCCGaAAGc-GCGGg--UGCACCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 44247 | 0.68 | 0.550277 |
Target: 5'- uGGGGCUgagCGCGCCgGCGacugGGCa-- -3' miRNA: 3'- cUCCCGAaa-GCGCGGgUGCa---CCGgca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 44033 | 0.66 | 0.629938 |
Target: 5'- aGAGGGCUgcagCGagGCgCGCGUcggGGCCGc -3' miRNA: 3'- -CUCCCGAaa--GCg-CGgGUGCA---CCGGCa -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 43580 | 0.72 | 0.317846 |
Target: 5'- -cGGGCgacgCGCGCCCcaGCGUGGCg-- -3' miRNA: 3'- cuCCCGaaa-GCGCGGG--UGCACCGgca -5' |
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6376 | 5' | -60.9 | NC_001847.1 | + | 42742 | 0.7 | 0.394988 |
Target: 5'- -cGGGCUg--GCGCCCcccuGgGUGGCCGa -3' miRNA: 3'- cuCCCGAaagCGCGGG----UgCACCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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