miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 134224 0.67 0.579914
Target:  5'- -cGGGCUUcccgGCGCCgGCGggcggcGGCCGg -3'
miRNA:   3'- cuCCCGAAag--CGCGGgUGCa-----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 130220 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 47872 0.66 0.616892
Target:  5'- -cGGGCgcgcgcagcgcgcgCGCGCCCGCGc-GCCGg -3'
miRNA:   3'- cuCCCGaaa-----------GCGCGGGUGCacCGGCa -5'
6376 5' -60.9 NC_001847.1 + 131231 0.66 0.62793
Target:  5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3'
miRNA:   3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 54601 0.66 0.629938
Target:  5'- uGGcGGCg--CGCGCCCgcgccgaugccgACGUGcGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCGCGGG------------UGCAC-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 33882 0.66 0.639976
Target:  5'- aGGaGGCg--C-CGCCgCGCGUGGCCGc -3'
miRNA:   3'- cUC-CCGaaaGcGCGG-GUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 40871 0.68 0.550277
Target:  5'- -cGGGC----GCGCCCaaugcGCGUGGUCGUa -3'
miRNA:   3'- cuCCCGaaagCGCGGG-----UGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 27803 0.69 0.491649
Target:  5'- -cGGGCUcuggccaUUCGCGCCCcggcgcacGCGcGGCUGa -3'
miRNA:   3'- cuCCCGA-------AAGCGCGGG--------UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 102801 0.68 0.537575
Target:  5'- cGGGGGCUgggcccccuccgcgcCGCGCCgCGCG-GGCCc- -3'
miRNA:   3'- -CUCCCGAaa-------------GCGCGG-GUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 87356 0.66 0.679991
Target:  5'- cGAGGGCcuggccgaGCaCCCGgcCGUGGCCGc -3'
miRNA:   3'- -CUCCCGaaag----CGcGGGU--GCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 15537 0.66 0.679991
Target:  5'- -cGGGCUgcugGCGCCggugcgCGCGcGGCCGUc -3'
miRNA:   3'- cuCCCGAaag-CGCGG------GUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 5030 0.68 0.521121
Target:  5'- cGAGGGCgcucUCGUacucgucccaGCCCGCGUcgcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGCG----------CGGGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32273 0.68 0.511535
Target:  5'- -cGuGGCUcgCGcCGUCCGCGUGGCgCGg -3'
miRNA:   3'- cuC-CCGAaaGC-GCGGGUGCACCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 80003 0.68 0.502022
Target:  5'- gGGGGGCUcuaCGCGCgCGCGUuuGGCgCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGgGUGCA--CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 59904 0.69 0.47397
Target:  5'- gGAGGGCggcgCGCGCgCGCGgcgaGaGCCGg -3'
miRNA:   3'- -CUCCCGaaa-GCGCGgGUGCa---C-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 125079 0.69 0.483236
Target:  5'- cGGGGCgc-UGgGCCCGCGcGGCCa- -3'
miRNA:   3'- cUCCCGaaaGCgCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 72974 0.69 0.491649
Target:  5'- uGGGGaCgcggaCGCGCCCGCGcgggagcUGGCCGc -3'
miRNA:   3'- cUCCC-Gaaa--GCGCGGGUGC-------ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98876 0.69 0.483236
Target:  5'- aAGGGCgcgUGCGCCUggGCGgcccaGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCGCGGG--UGCa----CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.