miRNA display CGI


Results 101 - 120 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 30260 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 2095 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 125079 0.69 0.483236
Target:  5'- cGGGGCgc-UGgGCCCGCGcGGCCa- -3'
miRNA:   3'- cUCCCGaaaGCgCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 38225 0.69 0.483236
Target:  5'- -cGGGCcg-CGCGCCUcuACGcGGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 79520 0.69 0.492588
Target:  5'- cGGGGCUggcggcgUCGuCGCCguCGgGGCCGg -3'
miRNA:   3'- cUCCCGAa------AGC-GCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 72974 0.69 0.491649
Target:  5'- uGGGGaCgcggaCGCGCCCGCGcgggagcUGGCCGc -3'
miRNA:   3'- cUCCC-Gaaa--GCGCGGGUGC-------ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 60385 0.66 0.660027
Target:  5'- aGGGGGCg--CGCGCcgaCCGCGUcucccaGCCGg -3'
miRNA:   3'- -CUCCCGaaaGCGCG---GGUGCAc-----CGGCa -5'
6376 5' -60.9 NC_001847.1 + 55914 0.66 0.650008
Target:  5'- cGGGGag--CGCGCCCGugaucCGcGGCCGg -3'
miRNA:   3'- cUCCCgaaaGCGCGGGU-----GCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 128002 0.68 0.520159
Target:  5'- -cGGGUUUUCGCugaugcuGCUCACG-GGCCa- -3'
miRNA:   3'- cuCCCGAAAGCG-------CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 27407 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 73186 0.67 0.609873
Target:  5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3'
miRNA:   3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 124721 0.67 0.609873
Target:  5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3'
miRNA:   3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 14529 0.66 0.619901
Target:  5'- cGGcGGCgcUCGCuGCCCGCGgugccGCCGUa -3'
miRNA:   3'- cUC-CCGaaAGCG-CGGGUGCac---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 127031 0.66 0.619901
Target:  5'- uGGGGCcc-CGCGCCUGCGcUGGCg-- -3'
miRNA:   3'- cUCCCGaaaGCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98876 0.69 0.483236
Target:  5'- aAGGGCgcgUGCGCCUggGCGgcccaGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCGCGGG--UGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 31074 0.69 0.492588
Target:  5'- uGGGGGCUcggCGCGCCgcUGcGGCCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 111364 0.68 0.549296
Target:  5'- -uGGGCgaccUCGCGCCCGgGcauccgcUGGCCa- -3'
miRNA:   3'- cuCCCGaa--AGCGCGGGUgC-------ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 130940 0.68 0.540497
Target:  5'- cAGGGCUUUgGCuGCCUGCGcgcGGCCc- -3'
miRNA:   3'- cUCCCGAAAgCG-CGGGUGCa--CCGGca -5'
6376 5' -60.9 NC_001847.1 + 27696 0.68 0.521121
Target:  5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3'
miRNA:   3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.