miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 124721 0.67 0.609873
Target:  5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3'
miRNA:   3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 73186 0.67 0.609873
Target:  5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3'
miRNA:   3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 27407 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 89883 0.67 0.599862
Target:  5'- -cGGGCUUcgcCGCGCUCACGccGGCgGc -3'
miRNA:   3'- cuCCCGAAa--GCGCGGGUGCa-CCGgCa -5'
6376 5' -60.9 NC_001847.1 + 30803 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 108540 0.71 0.386749
Target:  5'- gGAGGGCUUaCcUGCCCGCGgGGCgGUu -3'
miRNA:   3'- -CUCCCGAAaGcGCGGGUGCaCCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 32826 0.7 0.394988
Target:  5'- cGAGcGCg--CGagGCCCGCGUGGCCGc -3'
miRNA:   3'- -CUCcCGaaaGCg-CGGGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 42742 0.7 0.394988
Target:  5'- -cGGGCUg--GCGCCCcccuGgGUGGCCGa -3'
miRNA:   3'- cuCCCGAaagCGCGGG----UgCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 15834 0.7 0.394988
Target:  5'- cGAGGGCgaaUUCGCGCCUuugcccucgGCGUucGCCGa -3'
miRNA:   3'- -CUCCCGa--AAGCGCGGG---------UGCAc-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 106730 0.7 0.411804
Target:  5'- -cGGGCgccgguugCGCGCCCGCGcUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-----GCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 61943 0.7 0.420376
Target:  5'- cAGcGGCgg-CGCgGCCCGCGcgGGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCG-CGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 74270 0.71 0.386749
Target:  5'- uGGGGCccgcgcgCGCGCUCGCGcUGGCCu- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 113491 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 103167 0.72 0.339746
Target:  5'- -cGGGC-UUCGCGCCC-CGgGGCCc- -3'
miRNA:   3'- cuCCCGaAAGCGCGGGuGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 19353 0.72 0.339746
Target:  5'- -cGGGuCUUgcgCGCGCCCGacgGUGGCCa- -3'
miRNA:   3'- cuCCC-GAAa--GCGCGGGUg--CACCGGca -5'
6376 5' -60.9 NC_001847.1 + 43580 0.72 0.317846
Target:  5'- -cGGGCgacgCGCGCCCcaGCGUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-GCGCGGG--UGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 33649 0.73 0.297025
Target:  5'- cGA-GGCg--CGCGCgCGCGUGGCCGc -3'
miRNA:   3'- -CUcCCGaaaGCGCGgGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 50670 0.73 0.270933
Target:  5'- gGAGGGCga-CGUGCCCuGCG-GGCUGUg -3'
miRNA:   3'- -CUCCCGaaaGCGCGGG-UGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 69551 0.74 0.252597
Target:  5'- -cGGGCguggaugCGCGUgugccuggggggCCACGUGGCCGUg -3'
miRNA:   3'- cuCCCGaaa----GCGCG------------GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.