miRNA display CGI


Results 21 - 40 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 7155 0.66 0.670024
Target:  5'- -cGGGCgugUCGCGCUCGCucgcccgGGCgGUu -3'
miRNA:   3'- cuCCCGaa-AGCGCGGGUGca-----CCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 20243 0.66 0.669025
Target:  5'- aGGGGCUcgcccccgCGCGCgCCAUGUgcuauccuuuaaaGGCCGc -3'
miRNA:   3'- cUCCCGAaa------GCGCG-GGUGCA-------------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 101357 0.66 0.669025
Target:  5'- cGGGGCUgcaugCGCGCgcuugcgCCGCGggGGCUGc -3'
miRNA:   3'- cUCCCGAaa---GCGCG-------GGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 57771 0.66 0.669025
Target:  5'- cGGGGCUgcugGUGCUCGCcgggcugGUGGCCGc -3'
miRNA:   3'- cUCCCGAaag-CGCGGGUG-------CACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 77467 0.66 0.664029
Target:  5'- uGGGGCgggCGCcgggcgcccggcccgGCCCGCcggcccgagucgGUGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCG---------------CGGGUG------------CACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 74368 0.66 0.660027
Target:  5'- -uGGGCUgcUGCGCCU-CGUGGCg-- -3'
miRNA:   3'- cuCCCGAaaGCGCGGGuGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 56082 0.66 0.660027
Target:  5'- --cGGCUgagCGCGCCCGgGgugcggGGCUGg -3'
miRNA:   3'- cucCCGAaa-GCGCGGGUgCa-----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 60385 0.66 0.660027
Target:  5'- aGGGGGCg--CGCGCcgaCCGCGUcucccaGCCGg -3'
miRNA:   3'- -CUCCCGaaaGCGCG---GGUGCAc-----CGGCa -5'
6376 5' -60.9 NC_001847.1 + 86521 0.66 0.660027
Target:  5'- cGGcGGCUgg-GCGCCCGCGUG-CUGg -3'
miRNA:   3'- cUC-CCGAaagCGCGGGUGCACcGGCa -5'
6376 5' -60.9 NC_001847.1 + 14428 0.66 0.659026
Target:  5'- cGGGGCUccgcuguUUgGCGCCgagCGCGcGGCCGc -3'
miRNA:   3'- cUCCCGA-------AAgCGCGG---GUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 87619 0.66 0.650008
Target:  5'- cGGcGGCUUUgGCGCCCGgGcUGcGCUGg -3'
miRNA:   3'- cUC-CCGAAAgCGCGGGUgC-AC-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 98940 0.66 0.650008
Target:  5'- gGAGGGCg--CGCaGCCCcucguACGcGGCCu- -3'
miRNA:   3'- -CUCCCGaaaGCG-CGGG-----UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 59316 0.66 0.650008
Target:  5'- cAGGGCgcg-GCGCCgGCG-GcGCCGUa -3'
miRNA:   3'- cUCCCGaaagCGCGGgUGCaC-CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 55914 0.66 0.650008
Target:  5'- cGGGGag--CGCGCCCGugaucCGcGGCCGg -3'
miRNA:   3'- cUCCCgaaaGCGCGGGU-----GCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 73235 0.66 0.645996
Target:  5'- gGGGGGCggcggcgcgggCGCGCUCGa--GGCCGUg -3'
miRNA:   3'- -CUCCCGaaa--------GCGCGGGUgcaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 122823 0.66 0.639976
Target:  5'- cGAGccGGCgggCGCGCCCAcCG-GGCCc- -3'
miRNA:   3'- -CUC--CCGaaaGCGCGGGU-GCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 11183 0.66 0.639976
Target:  5'- uGGGGCUgcCGCugGUCCGCGcggGGCUGg -3'
miRNA:   3'- cUCCCGAaaGCG--CGGGUGCa--CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 6970 0.66 0.639976
Target:  5'- cGGcGGCgcUUC-CGCCCGCG-GGCCGc -3'
miRNA:   3'- cUC-CCGa-AAGcGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 128817 0.66 0.639976
Target:  5'- cGGGGCaccCGCGU--ACGUGGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCGggUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 33882 0.66 0.639976
Target:  5'- aGGaGGCg--C-CGCCgCGCGUGGCCGc -3'
miRNA:   3'- cUC-CCGaaaGcGCGG-GUGCACCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.