miRNA display CGI


Results 21 - 40 of 1550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 3' -60.3 NC_001847.1 + 67634 0.66 0.750188
Target:  5'- cGCCgGCgGAG-ACGGCGGCgGCuaCGa -3'
miRNA:   3'- -CGG-CGgCUCaUGCCGUUGgCGcgGCg -5'
6377 3' -60.3 NC_001847.1 + 79851 0.66 0.750188
Target:  5'- cGCCGCUGGGacacgACuGCcGCCcguccgggcccgGCGCCGUu -3'
miRNA:   3'- -CGGCGGCUCa----UGcCGuUGG------------CGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 90708 0.66 0.750188
Target:  5'- cGCgCGCCGcgcccccGUGCGcgaacGCAGCCGCucGCgGCg -3'
miRNA:   3'- -CG-GCGGCu------CAUGC-----CGUUGGCG--CGgCG- -5'
6377 3' -60.3 NC_001847.1 + 110904 0.66 0.750188
Target:  5'- cCCGCCGc--GCGGCGGCUGaacguggagauCGCCGa -3'
miRNA:   3'- cGGCGGCucaUGCCGUUGGC-----------GCGGCg -5'
6377 3' -60.3 NC_001847.1 + 17649 0.66 0.750188
Target:  5'- aGCCcaGCCGAcgucgacgacGU-CGGCGGCuCGCGguCCGCc -3'
miRNA:   3'- -CGG--CGGCU----------CAuGCCGUUG-GCGC--GGCG- -5'
6377 3' -60.3 NC_001847.1 + 4925 0.66 0.750188
Target:  5'- -gCGCCG---GCGGCAACaGCGCCc- -3'
miRNA:   3'- cgGCGGCucaUGCCGUUGgCGCGGcg -5'
6377 3' -60.3 NC_001847.1 + 35539 0.66 0.750188
Target:  5'- uCCGCCGG--ACuGCAGCCccGCGCCa- -3'
miRNA:   3'- cGGCGGCUcaUGcCGUUGG--CGCGGcg -5'
6377 3' -60.3 NC_001847.1 + 43651 0.66 0.750188
Target:  5'- -gCGCgCGAGgGCucgGGUGGCC-CGCCGCa -3'
miRNA:   3'- cgGCG-GCUCaUG---CCGUUGGcGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 97624 0.66 0.750188
Target:  5'- aCCGUCGAGggugcguccagGCGGCGcGCCaaaaagGCGUCGUa -3'
miRNA:   3'- cGGCGGCUCa----------UGCCGU-UGG------CGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 9520 0.66 0.749253
Target:  5'- --aGCCGAGcggGCGGCGcgcuagcguccguGCgUGCGCCaGCg -3'
miRNA:   3'- cggCGGCUCa--UGCCGU-------------UG-GCGCGG-CG- -5'
6377 3' -60.3 NC_001847.1 + 55934 0.66 0.746444
Target:  5'- cGCgGCCGGcGUcgcgagcccagaauGCGcacccgcGCGACCGCGuCCGUa -3'
miRNA:   3'- -CGgCGGCU-CA--------------UGC-------CGUUGGCGC-GGCG- -5'
6377 3' -60.3 NC_001847.1 + 60815 0.66 0.740801
Target:  5'- cGCgCGCC---UGCGGCAGCgGCaCCGUc -3'
miRNA:   3'- -CG-GCGGcucAUGCCGUUGgCGcGGCG- -5'
6377 3' -60.3 NC_001847.1 + 103126 0.66 0.740801
Target:  5'- cCCGCgCGAGcGCGG--GCCGcCGgCGCg -3'
miRNA:   3'- cGGCG-GCUCaUGCCguUGGC-GCgGCG- -5'
6377 3' -60.3 NC_001847.1 + 107450 0.66 0.740801
Target:  5'- cCCGCCGGcgcucGCGcGCcucAGCCcgacGCGCCGCg -3'
miRNA:   3'- cGGCGGCUca---UGC-CG---UUGG----CGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 4637 0.66 0.740801
Target:  5'- cCCGCCGGcgcucGCGcGCcucAGCCcgacGCGCCGCg -3'
miRNA:   3'- cGGCGGCUca---UGC-CG---UUGG----CGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 128316 0.66 0.740801
Target:  5'- cUCGCCGAGgACGuCAccuUUGCGCUGCa -3'
miRNA:   3'- cGGCGGCUCaUGCcGUu--GGCGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 72211 0.66 0.740801
Target:  5'- gGUCGCgGAGgcagGGCAcgcCCGgGCCGUc -3'
miRNA:   3'- -CGGCGgCUCaug-CCGUu--GGCgCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 68592 0.66 0.740801
Target:  5'- cGCUGCCGcAGUA-GGCG-CaCGCGuCCaGCg -3'
miRNA:   3'- -CGGCGGC-UCAUgCCGUuG-GCGC-GG-CG- -5'
6377 3' -60.3 NC_001847.1 + 19528 0.66 0.740801
Target:  5'- uGCgGCaGAa-ACGGCAGCCGgacuccaaGCCGCa -3'
miRNA:   3'- -CGgCGgCUcaUGCCGUUGGCg-------CGGCG- -5'
6377 3' -60.3 NC_001847.1 + 48064 0.66 0.740801
Target:  5'- cGCgCGCCGcGaaagGCGGgGGCgCaCGCCGCg -3'
miRNA:   3'- -CG-GCGGCuCa---UGCCgUUG-GcGCGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.