miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 781 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 16184 0.66 0.946985
Target:  5'- -cGCGUaGCGCACCUCGacgggcuGCUCg -3'
miRNA:   3'- gaCGCG-CGCGUGGAGUaaaggu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 43722 0.66 0.952187
Target:  5'- gCUGCGCGCggacguggugGCGCaCUCug--CCAACa- -3'
miRNA:   3'- -GACGCGCG----------CGUG-GAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104239 0.66 0.943317
Target:  5'- -cGCcgGCGCGCGCCUCAc--CgGGCUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 106586 0.66 0.943317
Target:  5'- -gGCGC-CGUGuCCUCGUcgUCUGGCUCg -3'
miRNA:   3'- gaCGCGcGCGU-GGAGUAa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 118688 0.66 0.932918
Target:  5'- uCUGCGcCGCGgGCCUCGUcguaguuUUCguAgUCg -3'
miRNA:   3'- -GACGC-GCGCgUGGAGUA-------AAGguUgAG- -5'
6377 5' -53.5 NC_001847.1 + 43271 0.66 0.933439
Target:  5'- gCUGCGCGUccgGCGCUUCGgcUUCCugaUCg -3'
miRNA:   3'- -GACGCGCG---CGUGGAGUa-AAGGuugAG- -5'
6377 5' -53.5 NC_001847.1 + 100310 0.66 0.933439
Target:  5'- gCUGCGCGCuCGCCUCcagcgCCcGgUCg -3'
miRNA:   3'- -GACGCGCGcGUGGAGuaaa-GGuUgAG- -5'
6377 5' -53.5 NC_001847.1 + 100446 0.66 0.933439
Target:  5'- -cGCgGCGCGCAaguCCUCGcg-CCAgcGCUCc -3'
miRNA:   3'- gaCG-CGCGCGU---GGAGUaaaGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 131650 0.66 0.933439
Target:  5'- -aGCuCGCGCGgCUCAUgugCgAGCUCu -3'
miRNA:   3'- gaCGcGCGCGUgGAGUAaa-GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 35462 0.66 0.933439
Target:  5'- -cGCGcCGCGCGCCgCAaagCCAGCc- -3'
miRNA:   3'- gaCGC-GCGCGUGGaGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 131165 0.66 0.938505
Target:  5'- -cGCGCugGCGCugCUCAcggcCCAcCUCg -3'
miRNA:   3'- gaCGCG--CGCGugGAGUaaa-GGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 71709 0.66 0.938505
Target:  5'- uCUGCGCgGUGCGCCggcccgCCGGCg- -3'
miRNA:   3'- -GACGCG-CGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 75214 0.66 0.938505
Target:  5'- uUGCGUgGCGC-CCUUccg-CCGGCUCu -3'
miRNA:   3'- gACGCG-CGCGuGGAGuaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 81710 0.66 0.938998
Target:  5'- -gGCGCGCGCGCCgguggaagcggcacgCGcccUCCAGCc- -3'
miRNA:   3'- gaCGCGCGCGUGGa--------------GUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 115471 0.66 0.943317
Target:  5'- ---gGCGCGCACCcggucgcaGUUUCCGGCg- -3'
miRNA:   3'- gacgCGCGCGUGGag------UAAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 99460 0.67 0.928116
Target:  5'- uUGCGCaGCGCGCCgcUCGgggCCAAgaUCa -3'
miRNA:   3'- gACGCG-CGCGUGG--AGUaaaGGUUg-AG- -5'
6377 5' -53.5 NC_001847.1 + 72960 0.67 0.928116
Target:  5'- -cGCGCGCGUggACCUCGgcgUgGGCUa -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 80868 0.67 0.928116
Target:  5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3'
miRNA:   3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.