miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 87470 0.67 0.904272
Target:  5'- -gGCGCGCGCccGCUUCGUaaacuuggCCGuGCUCg -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUAaa------GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 5675 0.67 0.916704
Target:  5'- -cGuCGCGCGCGgCggCGgccgCCAGCUCa -3'
miRNA:   3'- gaC-GCGCGCGUgGa-GUaaa-GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 99460 0.67 0.928116
Target:  5'- uUGCGCaGCGCGCCgcUCGgggCCAAgaUCa -3'
miRNA:   3'- gACGCG-CGCGUGG--AGUaaaGGUUg-AG- -5'
6377 5' -53.5 NC_001847.1 + 99220 0.67 0.904272
Target:  5'- -aGCGCGCGCgACCgcCGgugCCAugccGCUCg -3'
miRNA:   3'- gaCGCGCGCG-UGGa-GUaaaGGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 89136 0.67 0.910615
Target:  5'- -cGUGCGCGCG-CUCGUgcccgUCAACUUu -3'
miRNA:   3'- gaCGCGCGCGUgGAGUAaa---GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 12323 0.67 0.928116
Target:  5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3'
miRNA:   3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 85196 0.67 0.916704
Target:  5'- gUGCGCggcaccGCGCGCCaCGgcgUCCAACg- -3'
miRNA:   3'- gACGCG------CGCGUGGaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 74842 0.67 0.916704
Target:  5'- -cGCGCGCGCGCCgcccg-CCGccccGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 114875 0.67 0.910615
Target:  5'- -cGCGCgGCGCcgACCUCGccgUCUcGCUCu -3'
miRNA:   3'- gaCGCG-CGCG--UGGAGUaa-AGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 40948 0.67 0.910615
Target:  5'- -cGCGCGCaGCGCCUCGaacugCCcGCg- -3'
miRNA:   3'- gaCGCGCG-CGUGGAGUaaa--GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 127089 0.67 0.910615
Target:  5'- uCUGCGCGCGgGCCgcgCGgcuuugggUCCAccggGCUg -3'
miRNA:   3'- -GACGCGCGCgUGGa--GUaa------AGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 58022 0.67 0.910615
Target:  5'- -cGCGCGCGCGCCUugaagCAgccCCGccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGA-----GUaaaGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 56729 0.67 0.910615
Target:  5'- -aGCGCGCGCGCCagCAgcgcgCCcGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaa--GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 99783 0.67 0.904272
Target:  5'- gCUGCGCcaGCGCGCUcggaUCAgagCCucGCUCg -3'
miRNA:   3'- -GACGCG--CGCGUGG----AGUaaaGGu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 38620 0.67 0.904272
Target:  5'- -gGCGCGCGCGgUcCGUUgccgCCcACUCg -3'
miRNA:   3'- gaCGCGCGCGUgGaGUAAa---GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 96554 0.67 0.922538
Target:  5'- -cGCGCGCGCucaacgccaggaGCCUCcgcggcUCCGGCa- -3'
miRNA:   3'- gaCGCGCGCG------------UGGAGuaa---AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 98022 0.67 0.916704
Target:  5'- -gGCGUGCGCGCCccagagCAUgaacaCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUAaa---GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 65615 0.67 0.922538
Target:  5'- -cGCGCGUGCugCUCGgcgCagGGCUUg -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGg-UUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.