miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 10072 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 15892 0.73 0.626958
Target:  5'- -cGCGCGgGCGCCgccauaaUCAgucCCAGCUCg -3'
miRNA:   3'- gaCGCGCgCGUGG-------AGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 130864 0.73 0.604734
Target:  5'- -cGCcgGCGCGCGCCUCGUggccgccaaagCCGACUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUAaa---------GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 4643 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 112885 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 99146 0.72 0.659774
Target:  5'- uCUGCGCuauccGCGCGCCUUGUggcgCCAGC-Cg -3'
miRNA:   3'- -GACGCG-----CGCGUGGAGUAaa--GGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 31026 0.72 0.659774
Target:  5'- -cGCGCGCGCGCCggCAacgCCGGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 128247 0.72 0.670325
Target:  5'- -gGCGCGCGCGCgCUCg---CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUG-GAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 18500 0.72 0.691316
Target:  5'- -cGCGCGCGCGCCagCAgcUCUGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 69753 0.72 0.670325
Target:  5'- cCUGCcaccGCGCGCugUUCAgcuuUUUCCAGCa- -3'
miRNA:   3'- -GACG----CGCGCGugGAGU----AAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 88473 0.71 0.7527
Target:  5'- -cGCGCGUGCugCUCGc--CCuACUCu -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78656 0.71 0.722382
Target:  5'- -gGuCGCGCGCGCCUgCGUcgCCGGCg- -3'
miRNA:   3'- gaC-GCGCGCGUGGA-GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 75245 0.71 0.723406
Target:  5'- -cGCGCGCGCGCCgcccuccucgCCAACg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaa----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104948 0.71 0.7527
Target:  5'- -gGCGCGCGCGCCgcgcaccgCGUcggCCAGgUCc -3'
miRNA:   3'- gaCGCGCGCGUGGa-------GUAaa-GGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 83604 0.71 0.7527
Target:  5'- -cGCGCGCGCGCg-CAgccUCCGACa- -3'
miRNA:   3'- gaCGCGCGCGUGgaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 55659 0.71 0.742694
Target:  5'- -aGaCGUGCGCGCCgcgc-UCCGGCUCg -3'
miRNA:   3'- gaC-GCGCGCGUGGaguaaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 46908 0.71 0.722382
Target:  5'- -cGCGcCGCGCcgGCCUCGgcUCCGGCg- -3'
miRNA:   3'- gaCGC-GCGCG--UGGAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102493 0.71 0.762591
Target:  5'- -gGCGcCGUcCACCUCGcccUCCAGCUCg -3'
miRNA:   3'- gaCGC-GCGcGUGGAGUaa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 129103 0.7 0.800819
Target:  5'- gUGCGCGCGCAgUUUAacgUCCAaaGCUa -3'
miRNA:   3'- gACGCGCGCGUgGAGUaa-AGGU--UGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.