miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 67300 0.7 0.809991
Target:  5'- -aGCGCGCGCGCCagcg--CCGGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 38033 0.7 0.809991
Target:  5'- gUGgGCGCGCGCCgccgcgCCGccGCUCg -3'
miRNA:   3'- gACgCGCGCGUGGaguaaaGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 43524 0.7 0.772359
Target:  5'- -gGCGCGCGCGggcuuCCUCGcggCCAACa- -3'
miRNA:   3'- gaCGCGCGCGU-----GGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 23107 0.7 0.781993
Target:  5'- -cGCGCGCGcCACCgcgUCGUUUCUAAa-- -3'
miRNA:   3'- gaCGCGCGC-GUGG---AGUAAAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 60851 0.7 0.781993
Target:  5'- gCUGCGCG-GCGCCagGgcgUCCAGCg- -3'
miRNA:   3'- -GACGCGCgCGUGGagUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 105666 0.7 0.781993
Target:  5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 90312 0.7 0.800819
Target:  5'- -aGCGCGacCGCGCC-CAUUgCCGACUg -3'
miRNA:   3'- gaCGCGC--GCGUGGaGUAAaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 81702 0.7 0.809991
Target:  5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3'
miRNA:   3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 41568 0.7 0.809991
Target:  5'- -aGCGCgucguguccgaGCGCGCCUUAaacuuggCCGGCUCg -3'
miRNA:   3'- gaCGCG-----------CGCGUGGAGUaaa----GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 2853 0.7 0.781993
Target:  5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 129103 0.7 0.800819
Target:  5'- gUGCGCGCGCAgUUUAacgUCCAaaGCUa -3'
miRNA:   3'- gACGCGCGCGUgGAGUaa-AGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 99661 0.69 0.81899
Target:  5'- -cGCGCGCGcCGCCUUug--CCGcCUCu -3'
miRNA:   3'- gaCGCGCGC-GUGGAGuaaaGGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 99170 0.69 0.81899
Target:  5'- gCUGCGCGCGCcuuggcgcCCUCGUggUCCucGCg- -3'
miRNA:   3'- -GACGCGCGCGu-------GGAGUAa-AGGu-UGag -5'
6377 5' -53.5 NC_001847.1 + 15049 0.69 0.81899
Target:  5'- -cGCGCGgGCGCUUUAUcUCCcgccccgcgcGGCUCg -3'
miRNA:   3'- gaCGCGCgCGUGGAGUAaAGG----------UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 66122 0.69 0.827808
Target:  5'- -aGCGCGaCGCACCgCAg---CAGCUCa -3'
miRNA:   3'- gaCGCGC-GCGUGGaGUaaagGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 130338 0.69 0.827808
Target:  5'- -gGCauCGCGCGCCUCG--UCCAGCa- -3'
miRNA:   3'- gaCGc-GCGCGUGGAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 98879 0.69 0.836435
Target:  5'- -gGCGCGUGCGCCUgGgcggcCCAggccgggaGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGAgUaaa--GGU--------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 88627 0.69 0.836435
Target:  5'- gUGCGCGCGCACgUgCGcgagagCCuGCUCa -3'
miRNA:   3'- gACGCGCGCGUGgA-GUaaa---GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 57452 0.69 0.825182
Target:  5'- -cGCGCGCGCACgccgccuugaagcgCUCGg--CCAGCa- -3'
miRNA:   3'- gaCGCGCGCGUG--------------GAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 109690 0.69 0.853083
Target:  5'- cCUGCGCGCGCucgGCCUgCAg--UCGGCg- -3'
miRNA:   3'- -GACGCGCGCG---UGGA-GUaaaGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.