miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 99170 0.69 0.81899
Target:  5'- gCUGCGCGCGCcuuggcgcCCUCGUggUCCucGCg- -3'
miRNA:   3'- -GACGCGCGCGu-------GGAGUAa-AGGu-UGag -5'
6377 5' -53.5 NC_001847.1 + 4387 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCgCGgc-CCAggcGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGU---UGAg -5'
6377 5' -53.5 NC_001847.1 + 111270 0.69 0.848176
Target:  5'- aUGCGCGCGCugCgaaagCAcUUuacgcgcgaggccagCCGGCUCg -3'
miRNA:   3'- gACGCGCGCGugGa----GUaAA---------------GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 18780 0.69 0.853083
Target:  5'- -aGCGCGCcaGCACCacgCAca-CCAGCUCc -3'
miRNA:   3'- gaCGCGCG--CGUGGa--GUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 76222 0.69 0.81899
Target:  5'- -aGCGCGCGUgccgACCUCGUc-CCGACcCg -3'
miRNA:   3'- gaCGCGCGCG----UGGAGUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 6123 0.69 0.826934
Target:  5'- -gGCGCGaGCGCCUCGccgCCAucgggggGCUCg -3'
miRNA:   3'- gaCGCGCgCGUGGAGUaaaGGU-------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 84552 0.69 0.827808
Target:  5'- -gGgGCGUGCGCCUCGUacacggCCucCUCg -3'
miRNA:   3'- gaCgCGCGCGUGGAGUAaa----GGuuGAG- -5'
6377 5' -53.5 NC_001847.1 + 28109 0.69 0.835581
Target:  5'- -cGCGCGCGaCACCgccgauuUCAUggCCGGCg- -3'
miRNA:   3'- gaCGCGCGC-GUGG-------AGUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 53029 0.69 0.836435
Target:  5'- gCUGCGCGCucGgGCCUCGgcUCCGAg-- -3'
miRNA:   3'- -GACGCGCG--CgUGGAGUaaAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 60741 0.69 0.836435
Target:  5'- -gGCGCGgGCGCggCGcgguggcgguUUUCCAGCUCc -3'
miRNA:   3'- gaCGCGCgCGUGgaGU----------AAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 46459 0.69 0.836435
Target:  5'- aUGCGCGCGCggaugGCCUugcgCAUggCCAGC-Ca -3'
miRNA:   3'- gACGCGCGCG-----UGGA----GUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 60317 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCa-----CCuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 107200 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCgCGgc-CCAggcGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGU---UGAg -5'
6377 5' -53.5 NC_001847.1 + 75661 0.69 0.844862
Target:  5'- -cGCGgGCGUugCUCGUgaaggCCGGgUCg -3'
miRNA:   3'- gaCGCgCGCGugGAGUAaa---GGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 109690 0.69 0.853083
Target:  5'- cCUGCGCGCGCucgGCCUgCAg--UCGGCg- -3'
miRNA:   3'- -GACGCGCGCG---UGGA-GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 99600 0.68 0.868874
Target:  5'- -cGCGCGC-CGCCUCGgcagCCAcgacCUCg -3'
miRNA:   3'- gaCGCGCGcGUGGAGUaaa-GGUu---GAG- -5'
6377 5' -53.5 NC_001847.1 + 131418 0.68 0.868874
Target:  5'- -cGCGUGCGCGCCgugg--CCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 60811 0.68 0.868874
Target:  5'- -aGCGCGCGCGCCUgCGg---CAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGA-GUaaagGUUGag -5'
6377 5' -53.5 NC_001847.1 + 109951 0.68 0.861089
Target:  5'- -cGCGCGCGgGgCUCGcuggCCAGCUg -3'
miRNA:   3'- gaCGCGCGCgUgGAGUaaa-GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 102259 0.68 0.861089
Target:  5'- -cGCgGCGCGCACCgugcccUCCAGCg- -3'
miRNA:   3'- gaCG-CGCGCGUGGaguaa-AGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.